Literature DB >> 12519955

The Arabidopsis SeedGenes Project.

Iris Tzafrir1, Allan Dickerman, Olga Brazhnik, Quoc Nguyen, John McElver, Catherine Frye, David Patton, David Meinke.   

Abstract

The SeedGenes database (http://www.seedgenes.org) presents molecular and phenotypic information on essential, non-redundant genes of Arabidopsis that give a seed phenotype when disrupted by mutation. Experimental details are synthesized for efficient use by the community and organized into two major sections in the database, one dealing with genes and the other with mutant alleles. The database can be queried for detailed information on a single gene to create a SeedGenes Profile. Queries can also generate lists of genes or mutants that fit specified criteria. The long-term goal is to establish a complete collection of Arabidopsis genes that give a knockout phenotype. This information is needed to focus attention on genes with important cellular functions in a model plant and to assess from a genetic perspective the extent of functional redundancy in the Arabidopsis genome.

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Year:  2003        PMID: 12519955      PMCID: PMC165475          DOI: 10.1093/nar/gkg028

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

Review 1.  Genetic and epigenetic processes in seed development.

Authors:  Allan R Lohe; Abed Chaudhury
Journal:  Curr Opin Plant Biol       Date:  2002-02       Impact factor: 7.834

2.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

3.  Functional genomic analysis of C. elegans chromosome I by systematic RNA interference.

Authors:  A G Fraser; R S Kamath; P Zipperlen; M Martinez-Campos; M Sohrmann; J Ahringer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

4.  Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III.

Authors:  P Gönczy; C Echeverri; K Oegema; A Coulson; S J Jones; R R Copley; J Duperon; J Oegema; M Brehm; E Cassin; E Hannak; M Kirkham; S Pichler; K Flohrs; A Goessen; S Leidel; A M Alleaume; C Martin; N Ozlü; P Bork; A A Hyman
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

6.  The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.

Authors:  E Huala; A W Dickerman; M Garcia-Hernandez; D Weems; L Reiser; F LaFond; D Hanley; D Kiphart; M Zhuang; W Huang; L A Mueller; D Bhattacharyya; D Bhaya; B W Sobral; W Beavis; D W Meinke; C D Town; C Somerville; S Y Rhee
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana.

Authors:  J McElver; I Tzafrir; G Aux; R Rogers; C Ashby; K Smith; C Thomas; A Schetter; Q Zhou; M A Cushman; J Tossberg; T Nickle; J Z Levin; M Law; D Meinke; D Patton
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

8.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

  8 in total
  57 in total

1.  The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination.

Authors:  Loïc Rajjou; Karine Gallardo; Isabelle Debeaujon; Joël Vandekerckhove; Claudette Job; Dominique Job
Journal:  Plant Physiol       Date:  2004-03-26       Impact factor: 8.340

2.  The preservation of plant genetic resources. Experiences with Arabidopsis.

Authors:  David Meinke; Randy Scholl
Journal:  Plant Physiol       Date:  2003-11       Impact factor: 8.340

3.  The chloroplast ribosomal protein L21 gene is essential for plastid development and embryogenesis in Arabidopsis.

Authors:  Tuanzhang Yin; Gang Pan; Han Liu; Jian Wu; Yongpeng Li; Zhenxing Zhao; Tingdong Fu; Yongming Zhou
Journal:  Planta       Date:  2011-11-22       Impact factor: 4.116

4.  Web-based Arabidopsis functional and structural genomics resources.

Authors:  Yan Lu; Robert L Last
Journal:  Arabidopsis Book       Date:  2008-10-28

5.  The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development.

Authors:  Jilian Fan; Sheng Quan; Travis Orth; Chie Awai; Joanne Chory; Jianping Hu
Journal:  Plant Physiol       Date:  2005-08-19       Impact factor: 8.340

6.  Substrate promiscuity of a rosmarinic acid synthase from lavender (Lavandula angustifolia L.).

Authors:  Christian Landmann; Stefanie Hücherig; Barbara Fink; Thomas Hoffmann; Daniela Dittlein; Heather A Coiner; Wilfried Schwab
Journal:  Planta       Date:  2011-03-22       Impact factor: 4.116

7.  Sulfurtransferases 1 and 2 play essential roles in embryo and seed development in Arabidopsis thaliana.

Authors:  Guohong Mao; Ruigang Wang; Yuefeng Guan; Yidong Liu; Shuqun Zhang
Journal:  J Biol Chem       Date:  2010-12-28       Impact factor: 5.157

8.  Reverse-genetic analysis of the two biotin-containing subunit genes of the heteromeric acetyl-coenzyme A carboxylase in Arabidopsis indicates a unidirectional functional redundancy.

Authors:  Xu Li; Hilal Ilarslan; Libuse Brachova; Hui-Rong Qian; Ling Li; Ping Che; Eve Syrkin Wurtele; Basil J Nikolau
Journal:  Plant Physiol       Date:  2010-10-28       Impact factor: 8.340

9.  Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.

Authors:  Kristoffer Palma; Qingguo Zhao; Yu Ti Cheng; Dongling Bi; Jacqueline Monaghan; Wei Cheng; Yuelin Zhang; Xin Li
Journal:  Genes Dev       Date:  2007-06-15       Impact factor: 11.361

Review 10.  'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.

Authors:  Andrew D Hanson; Anne Pribat; Jeffrey C Waller; Valérie de Crécy-Lagard
Journal:  Biochem J       Date:  2009-12-14       Impact factor: 3.857

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