Literature DB >> 11125061

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.

E Huala1, A W Dickerman, M Garcia-Hernandez, D Weems, L Reiser, F LaFond, D Hanley, D Kiphart, M Zhuang, W Huang, L A Mueller, D Bhattacharyya, D Bhaya, B W Sobral, W Beavis, D W Meinke, C D Town, C Somerville, S Y Rhee.   

Abstract

Arabidopsis thaliana, a small annual plant belonging to the mustard family, is the subject of study by an estimated 7000 researchers around the world. In addition to the large body of genetic, physiological and biochemical data gathered for this plant, it will be the first higher plant genome to be completely sequenced, with completion expected at the end of the year 2000. The sequencing effort has been coordinated by an international collaboration, the Arabidopsis Genome Initiative (AGI). The rationale for intensive investigation of Arabidopsis is that it is an excellent model for higher plants. In order to maximize use of the knowledge gained about this plant, there is a need for a comprehensive database and information retrieval and analysis system that will provide user-friendly access to Arabidopsis information. This paper describes the initial steps we have taken toward realizing these goals in a project called The Arabidopsis Information Resource (TAIR) (www.arabidopsis.org).

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Year:  2001        PMID: 11125061      PMCID: PMC29827          DOI: 10.1093/nar/29.1.102

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  2 in total

1.  AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative.

Authors:  D J Flanders; S Weng; F X Petel; J M Cherry
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 2.  Arabidopsis thaliana: a model plant for genome analysis.

Authors:  D W Meinke; J M Cherry; C Dean; S D Rounsley; M Koornneef
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

  2 in total
  231 in total

Review 1.  Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems.

Authors:  Leonore Reiser; Lukas A Mueller; Seung Yon Rhee
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Short-chain dehydrogenase/reductase (SDR) relationships: a large family with eight clusters common to human, animal, and plant genomes.

Authors:  Yvonne Kallberg; Udo Oppermann; Hans Jörnvall; Bengt Persson
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

3.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

4.  A sequence-based map of Arabidopsis genes with mutant phenotypes.

Authors:  David W Meinke; Laura K Meinke; Thomas C Showalter; Anna M Schissel; Lukas A Mueller; Iris Tzafrir
Journal:  Plant Physiol       Date:  2003-02       Impact factor: 8.340

Review 5.  Populus: arabidopsis for forestry. Do we need a model tree?

Authors:  Gail Taylor
Journal:  Ann Bot       Date:  2002-12       Impact factor: 4.357

6.  OsbZIP48, a HY5 Transcription Factor Ortholog, Exerts Pleiotropic Effects in Light-Regulated Development.

Authors:  Naini Burman; Akanksha Bhatnagar; Jitendra P Khurana
Journal:  Plant Physiol       Date:  2017-08-03       Impact factor: 8.340

7.  DBSubLoc: database of protein subcellular localization.

Authors:  Tao Guo; Sujun Hua; Xinglai Ji; Zhirong Sun
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  The carboxylesterase gene family from Arabidopsis thaliana.

Authors:  Sean D G Marshall; Joanna J Putterill; Kim M Plummer; Richard D Newcomb
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

9.  The Arabidopsis SeedGenes Project.

Authors:  Iris Tzafrir; Allan Dickerman; Olga Brazhnik; Quoc Nguyen; John McElver; Catherine Frye; David Patton; David Meinke
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.

Authors:  Heiko Schoof; Rebecca Ernst; Vladimir Nazarov; Lukas Pfeifer; Hans-Werner Mewes; Klaus F X Mayer
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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