Literature DB >> 11779812

Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana.

J McElver1, I Tzafrir, G Aux, R Rogers, C Ashby, K Smith, C Thomas, A Schetter, Q Zhou, M A Cushman, J Tossberg, T Nickle, J Z Levin, M Law, D Meinke, D Patton.   

Abstract

The purpose of this project was to identify large numbers of Arabidopsis genes with essential functions during seed development. More than 120,000 T-DNA insertion lines were generated following Agrobacterium-mediated transformation. Transgenic plants were screened for defective seeds and putative mutants were subjected to detailed analysis in subsequent generations. Plasmid rescue and TAIL-PCR were used to recover plant sequences flanking insertion sites in tagged mutants. More than 4200 mutants with a wide range of seed phenotypes were identified. Over 1700 of these mutants were analyzed in detail. The 350 tagged embryo-defective (emb) mutants identified to date represent a significant advance toward saturation mutagenesis of EMB genes in Arabidopsis. Plant sequences adjacent to T-DNA borders in mutants with confirmed insertion sites were used to map genome locations and establish tentative identities for 167 EMB genes with diverse biological functions. The frequency of duplicate mutant alleles recovered is consistent with a relatively small number of essential (EMB) genes with nonredundant functions during seed development. Other functions critical to seed development in Arabidopsis may be protected from deleterious mutations by extensive genome duplications.

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Year:  2001        PMID: 11779812      PMCID: PMC1461914     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  63 in total

1.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

2.  Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells.

Authors:  T Lotan; M Ohto; K M Yee; M A West; R Lo; R W Kwong; K Yamagishi; R L Fischer; R B Goldberg; J J Harada
Journal:  Cell       Date:  1998-06-26       Impact factor: 41.582

3.  The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.

Authors:  C S Hardtke; T Berleth
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

4.  Pollen specificity elements reside in 30 bp of the proximal promoters of two pollen-expressed genes.

Authors:  Y Eyal; C Curie; S McCormick
Journal:  Plant Cell       Date:  1995-03       Impact factor: 11.277

Review 5.  Embryonic pattern formation in flowering plants.

Authors:  G Jürgens; R A Torres Ruiz; T Berleth
Journal:  Annu Rev Genet       Date:  1994       Impact factor: 16.830

6.  Isolation of high-chlorophyll-fluorescence mutants of Arabidopsis thaliana and their characterisation by spectroscopy, immunoblotting and northern hybridisation.

Authors:  J Meurer; K Meierhoff; P Westhoff
Journal:  Planta       Date:  1996       Impact factor: 4.116

7.  An improved integration replacement/disruption method for mutagenesis of yeast essential genes.

Authors:  A Tohe; T Oguchi
Journal:  Genes Genet Syst       Date:  2000-02       Impact factor: 1.517

8.  The EMB 506 gene encodes a novel ankyrin repeat containing protein that is essential for the normal development of Arabidopsis embryos.

Authors:  S Albert; B Després; J Guilleminot; N Bechtold; G Pelletier; M Delseny; M Devic
Journal:  Plant J       Date:  1999-01       Impact factor: 6.417

9.  An embryo-defective mutant of arabidopsis disrupted in the final step of biotin synthesis

Authors: 
Journal:  Plant Physiol       Date:  1998-03       Impact factor: 8.340

10.  Identification of molecular markers of embryogenesis in Arabidopsis thaliana by promoter trapping.

Authors:  J F Topping; F Agyeman; B Henricot; K Lindsey
Journal:  Plant J       Date:  1994-06       Impact factor: 6.417

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  139 in total

1.  Arabidopsis genes essential for seedling viability: isolation of insertional mutants and molecular cloning.

Authors:  G J Budziszewski; S P Lewis; L W Glover; J Reineke; G Jones; L S Ziemnik; J Lonowski; B Nyfeler; G Aux; Q Zhou; J McElver; D A Patton; R Martienssen; U Grossniklaus; H Ma; M Law; J Z Levin
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

2.  "Cross-talk" between cell division cycle and development in plants.

Authors:  Maria Beatrice Boniotti; Megan E Griffith
Journal:  Plant Cell       Date:  2002-01       Impact factor: 11.277

3.  A sequence-based map of Arabidopsis genes with mutant phenotypes.

Authors:  David W Meinke; Laura K Meinke; Thomas C Showalter; Anna M Schissel; Lukas A Mueller; Iris Tzafrir
Journal:  Plant Physiol       Date:  2003-02       Impact factor: 8.340

4.  A high-throughput Arabidopsis reverse genetics system.

Authors:  Allen Sessions; Ellen Burke; Gernot Presting; George Aux; John McElver; David Patton; Bob Dietrich; Patrick Ho; Johana Bacwaden; Cynthia Ko; Joseph D Clarke; David Cotton; David Bullis; Jennifer Snell; Trini Miguel; Don Hutchison; Bill Kimmerly; Theresa Mitzel; Fumiaki Katagiri; Jane Glazebrook; Marc Law; Stephen A Goff
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

5.  The Arabidopsis SeedGenes Project.

Authors:  Iris Tzafrir; Allan Dickerman; Olga Brazhnik; Quoc Nguyen; John McElver; Catherine Frye; David Patton; David Meinke
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  Arabidopsis research heats up in Seville.

Authors:  David Alabadi; Alessandra Devoto; Nancy A Eckardt
Journal:  Plant Cell       Date:  2002-09       Impact factor: 11.277

7.  Transcriptional programs of early reproductive stages in Arabidopsis.

Authors:  Lars Hennig; Wilhelm Gruissem; Ueli Grossniklaus; Claudia Köhler
Journal:  Plant Physiol       Date:  2004-07-09       Impact factor: 8.340

8.  A bifunctional locus (BIO3-BIO1) required for biotin biosynthesis in Arabidopsis.

Authors:  Rosanna Muralla; Elve Chen; Colleen Sweeney; Jennifer A Gray; Allan Dickerman; Basil J Nikolau; David Meinke
Journal:  Plant Physiol       Date:  2007-11-09       Impact factor: 8.340

9.  Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis.

Authors:  Ralf R Weigel; Ursula M Pfitzner; Christiane Gatz
Journal:  Plant Cell       Date:  2005-03-04       Impact factor: 11.277

10.  An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis.

Authors:  Ling Lu; Yuh-Ru Julie Lee; Ruiqin Pan; Julin N Maloof; Bo Liu
Journal:  Mol Biol Cell       Date:  2004-12-01       Impact factor: 4.138

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