Literature DB >> 12506224

Hydrogen bonding in 2-amino-4-methoxy-6-methylpyrimidine, 2-benzylamino-4-benzyloxy-6-methylpyrimidine and 4-benzylamino-2,6-bis(benzyloxy)pyrimidine: pi-stacked chains of fused R22(8) rings, and centrosymmetric R22(8) dimers.

Christopher Glidewell1, John N Low, Manuel Melguizo, Antonio Quesada.   

Abstract

Molecules of 2-amino-4-methoxy-6-methylpyrimidine, C(6)H(9)N(3)O, (I), lie on mirror planes in space group Pnma and are linked by two N-H...N hydrogen bonds [H...N = 2.26 and 2.34 A, N...N = 3.136 (2) and 3.212 (2) A, and N-H...N = 175 and 172 degrees ] into chains of edge-fused R(2)(2)(8) rings, which themselves are linked into sheets by aromatic pi-pi-stacking interactions. In 2-benzylamino-4-benzyloxy-6-methylpyrimidine, C(19)H(19)N(3)O, (II), and 4-benzylamino-2,6-bis(benzyloxy)pyrimidine, C(25)H(23)N(3)O(2), (III), the molecules are linked by paired N-H.N hydrogen bonds [H...N = 2.16 A, N.N = 3.039 (2) A and N-H...N = 165 degrees in (II); H...N = 2.15 A, N...N = 2.980 (2) A and N-H...N = 176 degrees in (III)] into centrosymmetric R(2)(2)(8) dimers, with no direction-specific interactions between these dimeric units.

Entities:  

Year:  2002        PMID: 12506224     DOI: 10.1107/s0108270102020206

Source DB:  PubMed          Journal:  Acta Crystallogr C        ISSN: 0108-2701            Impact factor:   1.172


  6 in total

1.  2-Amino-4-meth-oxy-6-methyl-pyrimidin-1-ium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; H S Yathirajan; B Narayana; K Prakash Kamath
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

2.  2-Amino-5-chloro-pyrimidin-1-ium hydrogen maleate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Venkatachalam Rajakannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14

3.  5,6-Dimethyl-1,2,4-triazin-3-amine.

Authors:  Man-Hua Wu; Qi-Ming Qiu; Sen Gao; Qiong-Hua Jin; Cun-Lin Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-07

4.  Supra-molecular patterns and Hirshfeld surface analysis in the crystal structure of bis-(2-amino-4-meth-oxy-6-methyl-pyrimidinium) isophthalate.

Authors:  Muthaiah Jeevaraj; Palaniyappan Sivajeyanthi; Bellarmin Edison; Kaliyaperumal Thanigaimani; Kasthuri Balasubramani; Ibrahim Abdul Razak
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-29

5.  Crystal structure and Hirshfeld surface analysis of 2-amino-4-meth-oxy-6-methyl-pyrimidinium 2-hy-droxy-benzoate.

Authors:  Muthaiah Jeevaraj; Palaniyappan Sivajeyanthi; Bellarmin Edison; Kaliyaperumal Thanigaimani; Kasthuri Balasubramani; Ibrahim Abdul Razak
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-08-08

6.  Crystal structure, hydrogen bonding and Hirshfeld surface analysis of 2-amino-4-meth-oxy-6-methyl-pyrimidinium 4-chloro-benzoate.

Authors:  Muthaiah Jeevaraj; Palaniyappan Sivajeyanthi; Bellarmin Edison; Kaliyaperumal Thanigaimani; Kasthuri Balasubramani
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-04-12
  6 in total

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