Literature DB >> 29250389

Supra-molecular patterns and Hirshfeld surface analysis in the crystal structure of bis-(2-amino-4-meth-oxy-6-methyl-pyrimidinium) isophthalate.

Muthaiah Jeevaraj1, Palaniyappan Sivajeyanthi1, Bellarmin Edison1, Kaliyaperumal Thanigaimani2, Kasthuri Balasubramani1, Ibrahim Abdul Razak3.   

Abstract

In the title mol-ecular salt, 2C6H10N3O+·C8H4O42-, the N atom of each of the two 2-amino-4-meth-oxy-6-methyl-pyrimidine mol-ecules lying between the amine and methyl groups has been protonated. The dihedral angles between the pyrimidine rings of the cations and the benzene ring of the succinate dianion are 5.04 (8) and 7.95 (8)°. Each of the cations is linked to the anion through a pair of N-H⋯O(carboxyl-ate) hydrogen bonds, forming cyclic R22(8) ring motifs which are then linked through inversion-related N-H⋯O hydrogen bonds, giving a central R24(8) motif. Peripheral amine N-H⋯O hydrogen-bonding inter-actions on either side of the succinate anion, also through centrosymmetric R22(8) extensions, form one-dimensional ribbons extending along [211]. The crystal structure also features π-π stacking inter-actions between the aromatic rings of the pyrimidine cations [minimum ring centroid separation = 3.6337 (9) Å]. The inter-molecular inter-actions were also investigated using Hirshfeld surface studies and two-dimensional fingerprint images.

Entities:  

Keywords:  2-amino­pyrimidines; Hirshfeld surface analysis; crystal structure; hydrogen bonding; isophthalates

Year:  2017        PMID: 29250389      PMCID: PMC5730326          DOI: 10.1107/S2056989017013950

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Pyrimidine and amino­pyrimidine derivatives have useful applications in many fields, for example as pesticides and pharmaceutical agents (Condon et al., 1993 ▸), while imazosulfuron, ethirmol and mepanipyrim have been commercialized as agrochemicals (Maeno et al., 1990 ▸). Pyrimidine derivatives have also been developed as anti­viral agents, such as AZT, which is the most widely used anti-AIDS drug (Gilchrist, 1997 ▸). Hydrogen bonding plays a vital role in mol­ecular recognition. It is significant to know the types of hydrogen bonds present to design new materials with highly specific features. Supra­molecular chemistry plays a pivotal role in many biological systems and is involved in artificial systems. It refers to the specific relation between two or more mol­ecules through non-covalent inter­actions such as hydrogen bonding, hydro­phobic forces, van der Waals forces and π–π inter­actions. The origin of supra­molecular architectures is correlated to the positions and properties of the active groups in mol­ecules (Desiraju, 1989 ▸; Steiner, 2002 ▸). As part of our recent studies in this field, the synthesis, crystal structure and Hirshfeld surface analysis of the title salt have been undertaken and are presented herein.

Structural commentary

The asymmetric unit of the title salt comprises two 2-amino-4-meth­oxy-6-methyl­pyrimidinium cations (A and B) and an isophthalate dianion (Fig. 1 ▸). The cations and the anion are essentially planar with the dihedral angles between the pyrimidine rings of cation A and cation B and that of the benzene ring of the succinate dianion of 5.04 (8) and 7.96 (8)°, respectively. The pyrimidinium cations are protonated at N1A and N1B, which are present between the amine and methyl groups. The protonation is reflected in an enhancement in bond angles at N1A/N1B [C1A—N1A—C2A = 120.76 (13)°; C1B—N1B—C2B = 120.99 (14)°], when compared with those at the unprotonated atom N3A/N3B [C1A—N3A—C4A = 116.01 (14)°; C1B—N3B—C4B = 116.45 (13)°]. The corres­ponding angle in neutral 2-amino-4-meth­oxy-6-methyl­pyrimidine (Glidewell et al., 2003 ▸) is 116.01 (18)°. The bond lengths and angles are normal for the carboxyl­ate groups of the isophthalate anion (Allen et al., 1987 ▸).
Figure 1

The atom numbering for the two cations and the dianion in the asymmetric unit of the title salt, with probability displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds (Table 1 ▸) are shown as dashed lines.

Supra­molecular features

In the crystal, the protonated nitro­gen atoms (N1A and N1B) and the 2-amino group nitro­gen atoms (N2A and N2B) of the cations form two pairs of N—H⋯O hydrogen bonds with carboxyl O-atom acceptors (O3, O5) and (O2, O4), respectively, of the isophalate anion (Table 1 ▸ and Fig. 1 ▸). These form eight-membered ring motifs with graph-set notation (8) on either side of the pyrimidine dianion. The ring units are cyclically linked across a crystalligraphic inversion centre through four N—H⋯O hydrogen bonds [graph set (8)], providing a DDAA array of quadruple hydrogen bonds (D = H-atom donor, A = H-atom acceptor) represented by the overall graph-set notation (8), (8), (8), as shown in Fig. 2 ▸. The same type of conjoined motif has been reported in the crystal structures of trimethoprim hydrogen glutarate (Robert et al., 2001 ▸), 2-amino-4-meth­oxy-6-methyl­pyridinium tri­fluoro­acetate (Jeevaraj et al., 2016 ▸) and 2-amino-4-meth­oxy-6-methyl­pyrimidinium 2-hy­droxy­benzoate (Jeevaraj et al., 2017 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2B—H2B1⋯O4i 0.862.042.8150 (19)150
N1A—H1A⋯O30.861.742.5921 (17)171
N1B—H1B⋯O50.861.792.6448 (17)175
N2B—H2B2⋯O40.861.932.7648 (19)164
N2A—H2A1⋯O2ii 0.862.032.805 (2)150
N2A—H2A2⋯O20.861.952.803 (2)172

Symmetry codes: (i) ; (ii) .

Figure 2

The DDAA array of quadruple hydrogen-bonding inter­actions with conjoined (8) and peripheral (8) ring motifs.

The extension of the crystal structure is through lateral duplex N2A— H⋯O2ii and N2B—H⋯O4i hydrogen bonds in centrosymmetric (8) inter­actions (for symmetry codes, see Table 1 ▸). These inter­actions result in one-dimensional ribbon structures extending along [211] (Fig. 3 ▸). The crystal structure is further stablized by π–π stacking inter­actions between the aromatic rings of the pyrimidine cations, having centroid–centroid separations Cg⋯Cg iii of 3.6337 (9) for cation B and Cg⋯Cg iv of 3.7260 (9) Å for cation A [symmetry codes: (iii) −x + 2, −y + 1, −z + 1; (iv) −x, −y, −z].
Figure 3

Crystal packing of the title compound in the unit cell viewed along b, with hydrogen bonds shown as dashed lines.

Hirshfeld surface analysis

The d norm parameter takes negative or positive values depending upon whether the inter­molecular close contact is shorter or longer than the van der Waals radii, respectively (Spackman & Jayatilaka, 2009 ▸; McKinnon et al., 2007 ▸). The 3D d norm surface of the title salt is shown in Fig. 4 ▸. Colours are used to illustrate the contribution of inter­molecular contacts present in the crystal structure with red inidicating N—H⋯O inter­actions. Two-dimensional fingerprint images are depicted in Fig. 5 ▸, and from this study it is revealed that the H⋯H inter­actions present (48.8%) are a major contributor whereas O⋯H/H⋯O (17.9%), C⋯H/H⋯C (13.8%), N⋯H/H⋯N (8.3%), C⋯C (4.1%), C⋯O/O⋯C (2.8%), C⋯N/N⋯C (1.7%), O⋯O (1.1%), O⋯N/N⋯O (0.9%) and NN (0.6%), have significant contribution to the total surface.
Figure 4

The three-dimensional d norm surface of the salt.

Figure 5

Two-dimensional fingerprint plots of the crystal and relative contribution of the atom pairs to the Hirshfeld surface.

Database survey

A search of the Cambridge Structural Database (Version 5.37, update February 2014; Groom et al., 2016 ▸) for 2-amino-4-meth­oxy-6-methyl­pyrimidine yielded only seven structures: VAQSOW, VAQSUC, VAQSEM, VAQSIQ, VAQRUB and VAQSAI (Aakeröy et al., 2003 ▸); NUQTOJ (Jasinski et al., 2010 ▸).

Synthesis and crystallization

The title compound was synthesized in a reaction involving a hot methano­lic solution (20 ml) of 2-amino-4-meth­oxy-6-methyl­pyrimidine (139 mg, 1.0 mmol) and a hot methano­lic solution (20 ml) of isophthalic acid (166 mg, 1.0 mmol). The two solutions were mixed and stirred on a heating magnetic stirrer for few minutes. The colorless solution was cooled and kept at room temperature for slow evaporation. After a few days, the crystals of the title compound suitable for the X-ray analysis appeared, yield 65%.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The hydrogen atoms were positioned geometrically (N—H = 0.86 Å and C—H = 0.96 or 0.93 Å) and were refined using a riding model with U iso(H) = 1.2 U eq(N or C) or 1.5U eq(methyl C).
Table 2

Experimental details

Crystal data
Chemical formula2C6H10N3O+·C8H4O4 2−
M r 444.45
Crystal system, space groupTriclinic, P
Temperature (K)296
a, b, c (Å)8.1346 (3), 8.2092 (3), 17.2340 (6)
α, β, γ (°)92.4728 (12), 91.3245 (13), 107.0413 (12)
V3)1098.54 (7)
Z 2
Radiation typeMo Kα
μ (mm−1)0.10
Crystal size (mm)0.62 × 0.42 × 0.35
 
Data collection
DiffractometerBruker Kappa APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2004)
T min, T max 0.893, 0.920
No. of measured, independent and observed [I > 2σ(I)] reflections36645, 5061, 3717
R int 0.028
(sin θ/λ)max−1)0.650
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.047, 0.151, 1.09
No. of reflections5060
No. of parameters293
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.21, −0.19

Computer programs: APEX2, XPREP and SAINT (Bruker, 2002), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2015 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) global, I, 1. DOI: 10.1107/S2056989017013950/zs2389sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017013950/zs2389Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017013950/zs2389Isup3.cml CCDC reference: 1559277 Additional supporting information: crystallographic information; 3D view; checkCIF report
2C6H10N3O+·C8H4O42Z = 2
Mr = 444.45F(000) = 468
Triclinic, P1Dx = 1.344 Mg m3
a = 8.1346 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.2092 (3) ÅCell parameters from 5061 reflections
c = 17.2340 (6) Åθ = 2.4–27.5°
α = 92.4728 (12)°µ = 0.10 mm1
β = 91.3245 (13)°T = 296 K
γ = 107.0413 (12)°Block, colourless
V = 1098.54 (7) Å30.62 × 0.42 × 0.35 mm
Bruker Kappa APEXII CCD diffractometer3717 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
ω and φ scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→10
Tmin = 0.893, Tmax = 0.920k = −10→10
36645 measured reflectionsl = −22→22
5061 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.151w = 1/[σ2(Fo2) + (0.0712P)2 + 0.2201P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.009
5060 reflectionsΔρmax = 0.21 e Å3
293 parametersΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
N1A−0.01236 (16)0.13584 (16)0.12598 (7)0.0429 (3)
H1A0.0558990.2277790.1478110.051*
N1B0.79527 (16)0.53363 (16)0.52792 (7)0.0432 (3)
H1B0.7408660.5593700.4891820.052*
N2B0.92978 (19)0.81823 (16)0.55416 (8)0.0538 (4)
H2B11.0013500.9001790.5812010.065*
H2B20.8724170.8402380.5154990.065*
N2A−0.0872 (2)0.29572 (17)0.03446 (8)0.0598 (4)
H2A1−0.1463570.305927−0.0060850.072*
H2A2−0.0159980.3845480.0573000.072*
N3B0.99869 (17)0.62724 (16)0.63248 (7)0.0429 (3)
N3A−0.21746 (17)0.00644 (16)0.02535 (8)0.0467 (3)
O1B1.05403 (17)0.42661 (15)0.70799 (7)0.0586 (3)
O1A−0.33778 (18)−0.28258 (16)0.02360 (9)0.0717 (4)
O20.16941 (18)0.57355 (16)0.10408 (8)0.0695 (4)
O30.21834 (16)0.39923 (14)0.18953 (7)0.0589 (3)
O40.79842 (17)0.88112 (15)0.41293 (7)0.0643 (4)
O50.64086 (15)0.61013 (14)0.40389 (7)0.0555 (3)
C1B0.90804 (19)0.65930 (18)0.57191 (8)0.0410 (3)
C1A−0.10574 (19)0.14466 (19)0.06145 (9)0.0425 (3)
C2B0.7665 (2)0.36687 (19)0.54402 (9)0.0456 (4)
C2A−0.0249 (2)−0.0166 (2)0.15691 (10)0.0487 (4)
C3B0.8530 (2)0.3293 (2)0.60541 (10)0.0515 (4)
H3BA0.8362640.2171380.6186820.062*
C3A−0.1312 (3)−0.1589 (2)0.12097 (12)0.0605 (5)
H3AA−0.139979−0.2661640.1390450.073*
C4B0.9690 (2)0.4660 (2)0.64837 (9)0.0454 (4)
C4A−0.2281 (2)−0.1402 (2)0.05555 (10)0.0517 (4)
C5B0.6421 (2)0.2386 (2)0.49067 (12)0.0607 (5)
H5BA0.5327230.2611380.4904660.091*
H5BB0.6288850.1262290.5081840.091*
H5BC0.6845650.2460300.4390340.091*
C5A0.0783 (3)−0.0105 (3)0.23016 (12)0.0660 (5)
H5AA0.1938990.0604000.2242980.099*
H5AB0.079853−0.1237110.2411330.099*
H5AC0.0276780.0357890.2722380.099*
C6B1.1837 (3)0.5631 (2)0.74878 (11)0.0634 (5)
H6BA1.2370280.5178710.7895060.095*
H6BB1.1316200.6444820.7708280.095*
H6BC1.2691110.6181620.7132230.095*
C6A−0.4472 (3)−0.2673 (3)−0.04086 (14)0.0779 (6)
H6AA−0.527231−0.376790−0.0548970.117*
H6AB−0.378123−0.226479−0.0843930.117*
H6AC−0.509236−0.188282−0.0262690.117*
C70.2483 (2)0.5433 (2)0.16146 (9)0.0436 (4)
C80.38688 (18)0.68720 (19)0.20172 (8)0.0389 (3)
C90.4277 (2)0.8500 (2)0.17444 (9)0.0472 (4)
H9A0.3726800.8699380.1295140.057*
C100.5503 (2)0.9830 (2)0.21387 (10)0.0553 (4)
H10A0.5771061.0922010.1954880.066*
C110.6331 (2)0.9540 (2)0.28053 (10)0.0476 (4)
H11A0.7144131.0441470.3071150.057*
C120.59580 (18)0.79158 (19)0.30793 (8)0.0391 (3)
C130.47164 (18)0.65826 (19)0.26823 (8)0.0389 (3)
H13A0.4452860.5489070.2864440.047*
C140.68577 (19)0.7582 (2)0.38013 (9)0.0431 (3)
U11U22U33U12U13U23
N1A0.0455 (7)0.0362 (7)0.0437 (7)0.0074 (5)−0.0061 (5)0.0030 (5)
N1B0.0458 (7)0.0367 (7)0.0409 (7)0.0029 (5)−0.0040 (5)0.0018 (5)
N2B0.0680 (9)0.0341 (7)0.0506 (8)0.0035 (6)−0.0239 (7)0.0028 (6)
N2A0.0728 (10)0.0390 (7)0.0543 (8)−0.0031 (7)−0.0290 (7)0.0093 (6)
N3B0.0522 (7)0.0362 (7)0.0371 (6)0.0081 (5)−0.0031 (5)0.0036 (5)
N3A0.0479 (7)0.0383 (7)0.0468 (7)0.0024 (6)−0.0024 (6)−0.0007 (6)
O1B0.0770 (8)0.0444 (7)0.0530 (7)0.0152 (6)−0.0096 (6)0.0127 (5)
O1A0.0745 (9)0.0378 (7)0.0886 (10)−0.0031 (6)−0.0095 (8)−0.0065 (6)
O20.0835 (9)0.0479 (7)0.0617 (8)−0.0022 (6)−0.0408 (7)0.0097 (6)
O30.0671 (8)0.0410 (6)0.0575 (7)0.0003 (5)−0.0270 (6)0.0067 (5)
O40.0736 (8)0.0427 (7)0.0608 (7)−0.0046 (6)−0.0352 (6)0.0032 (5)
O50.0626 (7)0.0425 (6)0.0511 (7)0.0008 (5)−0.0204 (5)0.0053 (5)
C1B0.0473 (8)0.0342 (7)0.0371 (7)0.0055 (6)−0.0010 (6)0.0008 (6)
C1A0.0447 (8)0.0376 (8)0.0408 (8)0.0055 (6)−0.0031 (6)0.0015 (6)
C2B0.0465 (8)0.0344 (8)0.0488 (9)0.0005 (6)0.0089 (7)0.0004 (6)
C2A0.0509 (9)0.0431 (9)0.0538 (9)0.0152 (7)0.0031 (7)0.0114 (7)
C3B0.0630 (10)0.0332 (8)0.0540 (9)0.0064 (7)0.0052 (8)0.0082 (7)
C3A0.0695 (11)0.0369 (9)0.0731 (12)0.0117 (8)−0.0006 (9)0.0108 (8)
C4B0.0552 (9)0.0393 (8)0.0408 (8)0.0112 (7)0.0056 (7)0.0078 (6)
C4A0.0518 (9)0.0378 (8)0.0591 (10)0.0038 (7)0.0044 (8)−0.0025 (7)
C5B0.0604 (10)0.0429 (9)0.0657 (11)−0.0034 (8)−0.0003 (9)−0.0058 (8)
C5A0.0691 (12)0.0608 (11)0.0697 (12)0.0200 (9)−0.0108 (10)0.0205 (10)
C6B0.0791 (12)0.0531 (10)0.0561 (10)0.0177 (9)−0.0205 (9)0.0053 (8)
C6A0.0690 (12)0.0590 (12)0.0871 (15)−0.0055 (10)−0.0173 (11)−0.0166 (11)
C70.0466 (8)0.0404 (8)0.0394 (8)0.0073 (6)−0.0112 (6)0.0004 (6)
C80.0378 (7)0.0383 (8)0.0379 (7)0.0076 (6)−0.0033 (6)−0.0007 (6)
C90.0502 (8)0.0441 (8)0.0442 (8)0.0097 (7)−0.0116 (7)0.0046 (7)
C100.0610 (10)0.0372 (8)0.0610 (10)0.0041 (7)−0.0126 (8)0.0094 (7)
C110.0473 (8)0.0369 (8)0.0515 (9)0.0029 (6)−0.0118 (7)−0.0022 (7)
C120.0366 (7)0.0401 (8)0.0384 (7)0.0086 (6)−0.0031 (6)−0.0008 (6)
C130.0389 (7)0.0357 (7)0.0387 (7)0.0065 (6)−0.0051 (6)0.0003 (6)
C140.0425 (8)0.0407 (8)0.0412 (8)0.0062 (6)−0.0088 (6)−0.0018 (6)
N1A—C1A1.3488 (19)C3B—C4B1.405 (2)
N1A—C2A1.359 (2)C3B—H3BA0.9300
N1A—H1A0.8600C3A—C4A1.400 (3)
N1B—C1B1.3514 (19)C3A—H3AA0.9300
N1B—C2B1.361 (2)C5B—H5BA0.9600
N1B—H1B0.8600C5B—H5BB0.9600
N2B—C1B1.3149 (19)C5B—H5BC0.9600
N2B—H2B10.8600C5A—H5AA0.9600
N2B—H2B20.8600C5A—H5AB0.9600
N2A—C1A1.312 (2)C5A—H5AC0.9600
N2A—H2A10.8600C6B—H6BA0.9600
N2A—H2A20.8600C6B—H6BB0.9600
N3B—C4B1.3166 (19)C6B—H6BC0.9600
N3B—C1B1.3433 (19)C6A—H6AA0.9600
N3A—C4A1.312 (2)C6A—H6AB0.9600
N3A—C1A1.3450 (19)C6A—H6AC0.9600
O1B—C4B1.3284 (19)C7—C81.503 (2)
O1B—C6B1.438 (2)C8—C91.385 (2)
O1A—C4A1.333 (2)C8—C131.389 (2)
O1A—C6A1.440 (3)C9—C101.384 (2)
O2—C71.2394 (18)C9—H9A0.9300
O3—C71.2565 (19)C10—C111.383 (2)
O4—C141.2500 (18)C10—H10A0.9300
O5—C141.2522 (19)C11—C121.384 (2)
C2B—C3B1.353 (2)C11—H11A0.9300
C2B—C5B1.492 (2)C12—C131.3934 (19)
C2A—C3A1.348 (3)C12—C141.505 (2)
C2A—C5A1.491 (2)C13—H13A0.9300
C1A—N1A—C2A120.76 (13)H5BA—C5B—H5BC109.5
C1A—N1A—H1A119.6H5BB—C5B—H5BC109.5
C2A—N1A—H1A119.6C2A—C5A—H5AA109.5
C1B—N1B—C2B120.99 (14)C2A—C5A—H5AB109.5
C1B—N1B—H1B119.5H5AA—C5A—H5AB109.5
C2B—N1B—H1B119.5C2A—C5A—H5AC109.5
C1B—N2B—H2B1120.0H5AA—C5A—H5AC109.5
C1B—N2B—H2B2120.0H5AB—C5A—H5AC109.5
H2B1—N2B—H2B2120.0O1B—C6B—H6BA109.5
C1A—N2A—H2A1120.0O1B—C6B—H6BB109.5
C1A—N2A—H2A2120.0H6BA—C6B—H6BB109.5
H2A1—N2A—H2A2120.0O1B—C6B—H6BC109.5
C4B—N3B—C1B116.45 (13)H6BA—C6B—H6BC109.5
C4A—N3A—C1A116.01 (14)H6BB—C6B—H6BC109.5
C4B—O1B—C6B117.64 (13)O1A—C6A—H6AA109.5
C4A—O1A—C6A117.94 (15)O1A—C6A—H6AB109.5
N2B—C1B—N3B119.21 (13)H6AA—C6A—H6AB109.5
N2B—C1B—N1B118.44 (14)O1A—C6A—H6AC109.5
N3B—C1B—N1B122.34 (14)H6AA—C6A—H6AC109.5
N2A—C1A—N3A119.59 (14)H6AB—C6A—H6AC109.5
N2A—C1A—N1A117.70 (13)O2—C7—O3124.16 (14)
N3A—C1A—N1A122.70 (14)O2—C7—C8118.79 (14)
C3B—C2B—N1B118.51 (14)O3—C7—C8117.04 (13)
C3B—C2B—C5B125.04 (15)C9—C8—C13119.47 (13)
N1B—C2B—C5B116.44 (15)C9—C8—C7120.64 (13)
C3A—C2A—N1A118.38 (16)C13—C8—C7119.86 (13)
C3A—C2A—C5A125.42 (16)C10—C9—C8120.16 (14)
N1A—C2A—C5A116.17 (15)C10—C9—H9A119.9
C2B—C3B—C4B117.56 (15)C8—C9—H9A119.9
C2B—C3B—H3BA121.2C11—C10—C9120.19 (15)
C4B—C3B—H3BA121.2C11—C10—H10A119.9
C2A—C3A—C4A117.88 (16)C9—C10—H10A119.9
C2A—C3A—H3AA121.1C10—C11—C12120.42 (14)
C4A—C3A—H3AA121.1C10—C11—H11A119.8
N3B—C4B—O1B119.14 (14)C12—C11—H11A119.8
N3B—C4B—C3B124.12 (15)C11—C12—C13119.16 (13)
O1B—C4B—C3B116.73 (14)C11—C12—C14120.92 (13)
N3A—C4A—O1A119.48 (17)C13—C12—C14119.91 (13)
N3A—C4A—C3A124.20 (15)C8—C13—C12120.59 (14)
O1A—C4A—C3A116.31 (16)C8—C13—H13A119.7
C2B—C5B—H5BA109.5C12—C13—H13A119.7
C2B—C5B—H5BB109.5O4—C14—O5124.55 (14)
H5BA—C5B—H5BB109.5O4—C14—C12117.59 (14)
C2B—C5B—H5BC109.5O5—C14—C12117.85 (13)
C4B—N3B—C1B—N2B178.73 (15)C1A—N3A—C4A—C3A−0.4 (3)
C4B—N3B—C1B—N1B−1.7 (2)C6A—O1A—C4A—N3A−3.3 (3)
C2B—N1B—C1B—N2B−179.43 (14)C6A—O1A—C4A—C3A176.28 (18)
C2B—N1B—C1B—N3B1.0 (2)C2A—C3A—C4A—N3A2.5 (3)
C4A—N3A—C1A—N2A179.66 (16)C2A—C3A—C4A—O1A−176.97 (17)
C4A—N3A—C1A—N1A−1.6 (2)O2—C7—C8—C9−1.1 (2)
C2A—N1A—C1A—N2A−179.80 (15)O3—C7—C8—C9179.99 (15)
C2A—N1A—C1A—N3A1.4 (2)O2—C7—C8—C13177.05 (15)
C1B—N1B—C2B—C3B0.2 (2)O3—C7—C8—C13−1.9 (2)
C1B—N1B—C2B—C5B−178.77 (14)C13—C8—C9—C10−0.9 (2)
C1A—N1A—C2A—C3A0.8 (2)C7—C8—C9—C10177.20 (15)
C1A—N1A—C2A—C5A−177.42 (15)C8—C9—C10—C110.3 (3)
N1B—C2B—C3B—C4B−0.6 (2)C9—C10—C11—C120.8 (3)
C5B—C2B—C3B—C4B178.30 (16)C10—C11—C12—C13−1.1 (2)
N1A—C2A—C3A—C4A−2.6 (3)C10—C11—C12—C14179.64 (15)
C5A—C2A—C3A—C4A175.43 (18)C9—C8—C13—C120.6 (2)
C1B—N3B—C4B—O1B−179.52 (14)C7—C8—C13—C12−177.54 (14)
C1B—N3B—C4B—C3B1.3 (2)C11—C12—C13—C80.4 (2)
C6B—O1B—C4B—N3B−4.3 (2)C14—C12—C13—C8179.69 (14)
C6B—O1B—C4B—C3B174.96 (16)C11—C12—C14—O4−2.0 (2)
C2B—C3B—C4B—N3B−0.1 (3)C13—C12—C14—O4178.71 (15)
C2B—C3B—C4B—O1B−179.39 (15)C11—C12—C14—O5176.88 (15)
C1A—N3A—C4A—O1A179.08 (15)C13—C12—C14—O5−2.4 (2)
D—H···AD—HH···AD···AD—H···A
N2B—H2B1···O4i0.862.042.8150 (19)150
N1A—H1A···O30.861.742.5921 (17)171
N1B—H1B···O50.861.792.6448 (17)175
N2B—H2B2···O40.861.932.7648 (19)164
N2A—H2A1···O2ii0.862.032.805 (2)150
N2A—H2A2···O20.861.952.803 (2)172
  7 in total

1.  Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces.

Authors:  Joshua J McKinnon; Dylan Jayatilaka; Mark A Spackman
Journal:  Chem Commun (Camb)       Date:  2007-10-07       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-Amino-4-meth-oxy-6-methyl-pyrimidin-1-ium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; H S Yathirajan; B Narayana; K Prakash Kamath
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

4.  Hydrogen bonding in 2-amino-4-methoxy-6-methylpyrimidine, 2-benzylamino-4-benzyloxy-6-methylpyrimidine and 4-benzylamino-2,6-bis(benzyloxy)pyrimidine: pi-stacked chains of fused R22(8) rings, and centrosymmetric R22(8) dimers.

Authors:  Christopher Glidewell; John N Low; Manuel Melguizo; Antonio Quesada
Journal:  Acta Crystallogr C       Date:  2002-12-10       Impact factor: 1.172

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  7 in total

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