Literature DB >> 12503170

Myoglobin, a paradigm in the study of protein dynamics.

Fritz G Parak1, G Ulrich Nienhaus.   

Abstract

More than 40 years have passed since Kendrew determined the structure of sperm whale myoglobin. It gave us the first insight into the impressive architecture of an alpha helical protein folded via loops into a well ordered, nearly spherical molecule. As time progressed, thousands of new protein structures were published with increasing resolution. The myoglobin structure was also continuously improved and, three years ago, a resolution of 0.9 A was achieved. A wide variety of spectroscopic techniques have been applied to study the dynamics of this molecule and the electronic properties of the heme iron atom. Even nowadays, experiments on myoglobin are still of great interest for a number of reasons: Physical research cannot go into all details in a large number of systems. In semiconductor physics, most concepts were developed by investigating germanium and silicon and were subsequently used to understand more complicated semiconductor systems; myoglobin plays a similar role in molecular biophysics. Concepts like "energy landscape", "conformational substates", "dynamic transition", or "protein-specific motions" should be of general relevance for understanding the physics of biological macromolecules. In biology, functionally important processes often occur at conditions and time scales where physical experiments are extremely difficult and yield ambiguous results. Going to low temperatures often allows one to separate the different dynamic processes. Another helpful tool is molecular engineering. Specific alterations in the sequence of the protein open the possibility to modify reaction rates and to retard the kinetics.

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Year:  2002        PMID: 12503170     DOI: 10.1002/1439-7641(20020315)3:3<249::AID-CPHC249>3.0.CO;2-A

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  11 in total

1.  Direct observation of tiers in the energy landscape of a chromoprotein: a single-molecule study.

Authors:  Clemens Hofmann; Thijs J Aartsma; Hartmut Michel; Jürgen Köhler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

2.  Infrared absorption study of the heme pocket dynamics of carbonmonoxyheme proteins.

Authors:  Andras D Kaposi; Jane M Vanderkooi; Solomon S Stavrov
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

3.  Dynamics of equilibrium structural fluctuations of apomyoglobin measured by fluorescence correlation spectroscopy.

Authors:  Huimin Chen; Elizabeth Rhoades; James S Butler; Stewart N Loh; Watt W Webb
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-07       Impact factor: 11.205

4.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

5.  Influence of distal residue B10 on CO dynamics in myoglobin and neuroglobin.

Authors:  Karin Nienhaus; G Ulrich Nienhaus
Journal:  J Biol Phys       Date:  2008-04-05       Impact factor: 1.365

6.  X-ray structure analysis of a metalloprotein with enhanced active-site resolution using in situ x-ray absorption near edge structure spectroscopy.

Authors:  Alessandro Arcovito; Maurizio Benfatto; Michele Cianci; S Samar Hasnain; Karin Nienhaus; G Ulrich Nienhaus; Carmelinda Savino; Richard W Strange; Beatrice Vallone; Stefano Della Longa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

7.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28

8.  Ligand dynamics in a protein internal cavity.

Authors:  Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Jochen Fuchs; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-28       Impact factor: 11.205

9.  Structure and dynamics of dioxygen bound to cobalt and iron heme.

Authors:  Ivan Degtyarenko; Risto M Nieminen; Carme Rovira
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

10.  Direct electrochemistry of hemoglobin immobilized on a functionalized multi-walled carbon nanotubes and gold nanoparticles nanocomplex-modified glassy carbon electrode.

Authors:  Jun Hong; Ying-Xue Zhao; Bao-Lin Xiao; Ali Akbar Moosavi-Movahedi; Hedayatollah Ghourchian; Nader Sheibani
Journal:  Sensors (Basel)       Date:  2013-07-05       Impact factor: 3.576

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