Literature DB >> 12490712

Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase.

Andreas Jäger1, Regina Samorski, Felicitas Pfeifer, Gabriele Klug.   

Abstract

The mc-gvp genes for gas vesicle formation in Haloferax mediterranei are transcribed from two promoters located in front of the mc-gvpA and mc-gvpD genes. The different transcripts originating from both promoters show different abundances dependent on salt concentration in the medium and growth phase. Here we show that the half-lives of these transcripts differ significantly and that the small gvp transcripts exhibit higher stabilities than the larger gvp transcripts. While the stability of most gvp transcripts is independent of the salt concentration in the medium, the gvpA mRNA decays about twice as fast in cultures grown at 18% salt compared to cultures grown at 25% salt. The stability of the 0.45 kb transcript population derived from the 5' part of the gvpD gene depends on the growth phase of the culture. Thus, differences in mRNA stability contribute to the salt-dependent and growth phase-dependent abundance of gvp transcripts. This implies that, like in bacteria and eukarya, mRNA processing contributes to regulated gene expression in archaea.

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Year:  2002        PMID: 12490712      PMCID: PMC140082          DOI: 10.1093/nar/gkf699

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  44 in total

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Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

Review 2.  The role of RNA stability during bacterial stress responses and starvation.

Authors:  K Takayama; S Kjelleberg
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Review 3.  Emerging features of mRNA decay in bacteria.

Authors:  D A Steege
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4.  An mRNA degrading complex in Rhodobacter capsulatus.

Authors:  S Jäger; O Fuhrmann; C Heck; M Hebermehl; E Schiltz; R Rauhut; G Klug
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

5.  A p-loop motif and two basic regions in the regulatory protein GvpD are important for the repression of gas vesicle formation in the archaeon Haloferax mediterranei.

Authors:  F Pfeifer; J Zotzel; B Kurenbach; R Röder; P Zimmermann
Journal:  Microbiology       Date:  2001-01       Impact factor: 2.777

Review 6.  Polyadenylation of mRNA in prokaryotes.

Authors:  N Sarkar
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

7.  Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.

Authors:  E V Koonin; Y I Wolf; L Aravind
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

8.  Use of a halobacterial bgaH reporter gene to analyse the regulation of gene expression in halophilic archaea.

Authors:  Dagmar Gregor; Felicitas Pfeifer
Journal:  Microbiology (Reading)       Date:  2001-07       Impact factor: 2.777

Review 9.  mRNA stability in eukaryotes.

Authors:  P Mitchell; D Tollervey
Journal:  Curr Opin Genet Dev       Date:  2000-04       Impact factor: 5.578

10.  Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  Elisabetta Bini; Vidula Dikshit; Kristi Dirksen; Melissa Drozda; Paul Blum
Journal:  RNA       Date:  2002-09       Impact factor: 4.942

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  11 in total

1.  Evidence for different contributions of archaea and bacteria to the ammonia-oxidizing potential of diverse Oregon soils.

Authors:  Anne E Taylor; Lydia H Zeglin; Sandra Dooley; David D Myrold; Peter J Bottomley
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

2.  A 5' leader sequence regulates expression of methanosarcinal CO dehydrogenase/acetyl coenzyme A synthase.

Authors:  Kimberly L Anderson; Ethel E Apolinario; Sheridan R MacAuley; Kevin R Sowers
Journal:  J Bacteriol       Date:  2009-09-18       Impact factor: 3.490

Review 3.  Distribution, formation and regulation of gas vesicles.

Authors:  Felicitas Pfeifer
Journal:  Nat Rev Microbiol       Date:  2012-09-03       Impact factor: 60.633

4.  Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer.

Authors:  Jing Han; Fan Zhang; Jing Hou; Xiaoqing Liu; Ming Li; Hailong Liu; Lei Cai; Bing Zhang; Yaping Chen; Jian Zhou; Songnian Hu; Hua Xiang
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

5.  Alternative Translation Initiation of a Haloarchaeal Serine Protease Transcript Containing Two In-Frame Start Codons.

Authors:  Wei Tang; Yufeng Wu; Moran Li; Jian Wang; Sha Mei; Bing Tang; Xiao-Feng Tang
Journal:  J Bacteriol       Date:  2016-06-13       Impact factor: 3.490

6.  Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.

Authors:  Sonja Hundt; Alexander Zaigler; Christian Lange; Jörg Soppa; Gabriele Klug
Journal:  J Bacteriol       Date:  2007-07-20       Impact factor: 3.490

7.  DNA damage induces nucleoid compaction via the Mre11-Rad50 complex in the archaeon Haloferax volcanii.

Authors:  Stéphane Delmas; Iain G Duggin; Thorsten Allers
Journal:  Mol Microbiol       Date:  2012-11-30       Impact factor: 3.501

8.  Global analysis of mRNA stability in the archaeon Sulfolobus.

Authors:  Anders F Andersson; Magnus Lundgren; Stefan Eriksson; Magnus Rosenlund; Rolf Bernander; Peter Nilsson
Journal:  Genome Biol       Date:  2006-10-26       Impact factor: 13.583

Review 9.  Haloarchaea and the formation of gas vesicles.

Authors:  Felicitas Pfeifer
Journal:  Life (Basel)       Date:  2015-02-02

10.  Biology and survival of extremely halophilic archaeon Haloarcula marismortui RR12 isolated from Mumbai salterns, India in response to salinity stress.

Authors:  Rebecca S Thombre; Vinaya D Shinde; Radhika S Oke; Sunil Kumar Dhar; Yogesh S Shouche
Journal:  Sci Rep       Date:  2016-05-27       Impact factor: 4.379

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