Literature DB >> 22843593

Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer.

Jing Han1, Fan Zhang, Jing Hou, Xiaoqing Liu, Ming Li, Hailong Liu, Lei Cai, Bing Zhang, Yaping Chen, Jian Zhou, Songnian Hu, Hua Xiang.   

Abstract

Haloferax mediterranei, an extremely halophilic archaeon, has shown promise for production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) from unrelated cheap carbon sources. Here we report the complete genome (3,904,707 bp) of H. mediterranei CGMCC 1.2087, consisting of one chromosome and three megaplasmids.

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Year:  2012        PMID： 22843593      PMCID： PMC3416209          DOI： 10.1128/JB.00880-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  Effects of Culture Conditions on Poly(beta-Hydroxybutyric Acid) Production by Haloferax mediterranei.

Authors:  Jose Garcia Lillo; Francisco Rodriguez-Valera
Journal:  Appl Environ Microbiol       Date:  1990-08       Impact factor: 4.792

3.  Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanica.

Authors:  Hailong Liu; Jing Han; Xiaoqing Liu; Jian Zhou; Hua Xiang
Journal:  J Genet Genomics       Date:  2011-05-17       Impact factor: 4.275

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Influence of nutritive factors on C50 carotenoids production by Haloferax mediterranei ATCC 33500 with two-stage cultivation.

Authors:  Chun-Jen Fang; Kuo-Lung Ku; Min-Hsiung Lee; Nan-Wei Su
Journal:  Bioresour Technol       Date:  2010-04-01       Impact factor: 9.642

Review 7.  Synthesis and production of polyhydroxyalkanoates by halophiles: current potential and future prospects.

Authors:  Jorge Quillaguamán; Héctor Guzmán; Doan Van-Thuoc; Rajni Hatti-Kaul
Journal:  Appl Microbiol Biotechnol       Date:  2009-12-19       Impact factor: 4.813

8.  Isolation, sequence, and expression of the gene encoding halocin H4, a bacteriocin from the halophilic archaeon Haloferax mediterranei R4.

Authors:  J Cheung; K J Danna; E M O'Connor; L B Price; R F Shand
Journal:  J Bacteriol       Date:  1997-01       Impact factor: 3.490

9.  Potential of various archae- and eubacterial strains as industrial polyhydroxyalkanoate producers from whey.

Authors:  Martin Koller; Paula Hesse; Rodolfo Bona; Christoph Kutschera; Aid Atlić; Gerhart Braunegg
Journal:  Macromol Biosci       Date:  2007-02-12       Impact factor: 4.979

10.  Genetic and biochemical characterization of the poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthase in Haloferax mediterranei.

Authors:  Qiuhe Lu; Jing Han; Ligang Zhou; Jian Zhou; Hua Xiang
Journal:  J Bacteriol       Date:  2008-04-11       Impact factor: 3.490
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  31 in total

1.  Propionyl coenzyme A (propionyl-CoA) carboxylase in Haloferax mediterranei: Indispensability for propionyl-CoA assimilation and impacts on global metabolism.

Authors:  Jing Hou; Hua Xiang; Jing Han
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Haloarchaeal-type β-ketothiolases involved in Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthesis in Haloferax mediterranei.

Authors:  Jing Hou; Bo Feng; Jing Han; Hailong Liu; Dahe Zhao; Jian Zhou; Hua Xiang
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

3.  Ferredoxin-dependent glutamate synthase: involvement in ammonium assimilation in Haloferax mediterranei.

Authors:  C Pire; R M Martínez-Espinosa; F Pérez-Pomares; J Esclapez; M J Bonete
Journal:  Extremophiles       Date:  2013-11-30       Impact factor: 2.395

4.  Multiple propionyl coenzyme A-supplying pathways for production of the bioplastic poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in Haloferax mediterranei.

Authors:  Jing Han; Jing Hou; Fan Zhang; Guomin Ai; Ming Li; Shuangfeng Cai; Hailong Liu; Lei Wang; Zejian Wang; Siliang Zhang; Lei Cai; Dahe Zhao; Jian Zhou; Hua Xiang
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

5.  Cell fusion and hybrids in Archaea: prospects for genome shuffling and accelerated strain development for biotechnology.

Authors:  Adit Naor; Uri Gophna
Journal:  Bioengineered       Date:  2012-10-30       Impact factor: 3.269

6.  Malate Synthase and β-Methylmalyl Coenzyme A Lyase Reactions in the Methylaspartate Cycle in Haloarcula hispanica.

Authors:  Farshad Borjian; Jing Han; Jing Hou; Hua Xiang; Jan Zarzycki; Ivan A Berg
Journal:  J Bacteriol       Date:  2017-01-30       Impact factor: 3.490

7.  Antagonistic interactions and production of halocin antimicrobial peptides among extremely halophilic prokaryotes isolated from the solar saltern of Sfax, Tunisia.

Authors:  Fadoua Ghanmi; Alyssa Carré-Mlouka; Manon Vandervennet; Ines Boujelben; Doniez Frikha; Habib Ayadi; Jean Peduzzi; Sylvie Rebuffat; Sami Maalej
Journal:  Extremophiles       Date:  2016-04-13       Impact factor: 2.395

8.  Production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferax mediterranei using rice-based ethanol stillage with simultaneous recovery and re-use of medium salts.

Authors:  Anirban Bhattacharyya; Jayeeta Saha; Saubhik Haldar; Asit Bhowmic; Ujjal Kumar Mukhopadhyay; Joydeep Mukherjee
Journal:  Extremophiles       Date:  2014-01-19       Impact factor: 2.395

9.  Analysis of the transcriptional regulator GlpR, promoter elements, and posttranscriptional processing involved in fructose-induced activation of the phosphoenolpyruvate-dependent sugar phosphotransferase system in Haloferax mediterranei.

Authors:  Lei Cai; Shuangfeng Cai; Dahe Zhao; Jinhua Wu; Lei Wang; Xiaoqing Liu; Ming Li; Jing Hou; Jian Zhou; Jingfang Liu; Jing Han; Hua Xiang
Journal:  Appl Environ Microbiol       Date:  2013-12-13       Impact factor: 4.792

10.  Substrate promiscuity: AglB, the archaeal oligosaccharyltransferase, can process a variety of lipid-linked glycans.

Authors:  Chen Cohen-Rosenzweig; Ziqiang Guan; Boaz Shaanan; Jerry Eichler
Journal:  Appl Environ Microbiol       Date:  2013-11-08       Impact factor: 4.792
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