Literature DB >> 12489832

Characterization and chromosomal distribution of novel satellite DNA sequences of the lesser rhea (Pterocnemia pennata) and the greater rhea (Rhea americana).

Kazuhiko Yamada1, Chizuko Nishida-Umehara, Yoichi Matsuda.   

Abstract

Two different types of novel satellite DNA (stDNA) sequences were cloned from the lesser rhea (Ptercnemia pennata) and the greater rhea (Rhea americana) after digestion of genomic DNAs with a restriction endonuclease Pvu II, and characterized by filter hybridization and in-situ hybridization to metaphase chromosomes. These nucleotide sequences consisted of GC-rich 288-bp and 332-bp repeated elements in P. pennata and 288-bp and 336-bp repeated elements in R. americana, all of which were organized in tandem arrays in the genome. The 288-bp and 332-bp elements of P. pennata displayed strong sequence similarity with the 288-bp and 336-bp elements of R. americana, respectively. The 332-bp and 336-bp elements were located on almost all the microchromosomes in both the species. The other type of repeated elements, the 288-bp element, was located on four and nine pairs of microchromosomes in P. pennata and R. americana, respectively. All the stDNA sequences were not crosshybridized to genomic DNAs of another three ratite species, ostrich (Struthio camelus), cassowary (Casuarius casuarius) and emu (Dromaius novaehollandiae), suggesting that these stDNA sequences are conserved in the same family but fairly divergent among the different families of Struthioniformes.

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Year:  2002        PMID: 12489832     DOI: 10.1023/a:1020996431588

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  23 in total

1.  Arrangements of macro- and microchromosomes in chicken cells.

Authors:  F A Habermann; M Cremer; J Walter; G Kreth; J von Hase; K Bauer; J Wienberg; C Cremer; T Cremer; I Solovei
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

2.  Low frequency of microsatellites in the avian genome.

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Journal:  Genome Res       Date:  1997-05       Impact factor: 9.043

3.  CpG islands of chicken are concentrated on microchromosomes.

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Journal:  Nat Genet       Date:  1996-03       Impact factor: 38.330

Review 4.  Highly repeated sequences in mammalian genomes.

Authors:  M F Singer
Journal:  Int Rev Cytol       Date:  1982

5.  Do the chromosomes of the kiwi provide evidence for a monophyletic origin of the ratites?

Authors:  L E de Boer
Journal:  Nature       Date:  1980-09-04       Impact factor: 49.962

6.  Sequence conservation of an avian centromeric repeated DNA component.

Authors:  C S Madsen; J E Brooks; E de Kloet; S R de Kloet
Journal:  Genome       Date:  1994-06       Impact factor: 2.166

7.  A 41-42 bp tandemly repeated sequence isolated from nuclear envelopes of chicken erythrocytes is located predominantly on microchromosomes.

Authors:  M A Matzke; F Varga; H Berger; J Schernthaner; D Schweizer; B Mayr; A J Matzke
Journal:  Chromosoma       Date:  1990-04       Impact factor: 4.316

8.  Chicken microchromosomes are hyperacetylated, early replicating, and gene rich.

Authors:  H A McQueen; G Siriaco; A P Bird
Journal:  Genome Res       Date:  1998-06       Impact factor: 9.043

9.  Characterization of a new repetitive sequence that is enriched on microchromosomes of turkey.

Authors:  A J Matzke; F Varga; P Gruendler; I Unfried; H Berger; B Mayr; M A Matzke
Journal:  Chromosoma       Date:  1992-12       Impact factor: 4.316

10.  Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae.

Authors:  J L Longmire; A K Lewis; N C Brown; J M Buckingham; L M Clark; M D Jones; L J Meincke; J Meyne; R L Ratliff; F A Ray
Journal:  Genomics       Date:  1988-01       Impact factor: 5.736

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  12 in total

1.  Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus.

Authors:  Anna Zlotina; Antonina Maslova; Nadezda Kosyakova; Ahmed B Hamid Al-Rikabi; Thomas Liehr; Alla Krasikova
Journal:  Chromosome Res       Date:  2018-12-18       Impact factor: 5.239

2.  Evolutionary dynamics of heterochromatin in the genome of Dichotomius beetles based on chromosomal analysis.

Authors:  Diogo Cavalcanti Cabral-de-Mello; Rita de Cássia de Moura; Adriana de Souza Melo; Cesar Martins
Journal:  Genetica       Date:  2011-01-26       Impact factor: 1.082

3.  Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae).

Authors:  Kazumi Matsubara; Yoshinobu Uno; Kornsorn Srikulnath; Risako Seki; Chizuko Nishida; Yoichi Matsuda
Journal:  Chromosoma       Date:  2015-07-24       Impact factor: 4.316

4.  cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

Authors:  Shigehiro Kuraku; Junko Ishijima; Chizuko Nishida-Umehara; Kiyokazu Agata; Shigeru Kuratani; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2006-03-17       Impact factor: 5.239

5.  A new family of satellite DNA sequences as a major component of centromeric heterochromatin in owls (Strigiformes).

Authors:  Kazuhiko Yamada; Chizuko Nishida-Umehara; Yoichi Matsuda
Journal:  Chromosoma       Date:  2004-03-03       Impact factor: 4.316

6.  Molecular structures of centromeric heterochromatin and karyotypic evolution in the Siamese crocodile (Crocodylus siamensis) (Crocodylidae, Crocodylia).

Authors:  Taiki Kawagoshi; Chizuko Nishida; Hidetoshi Ota; Yoshinori Kumazawa; Hideki Endo; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2008-10-22       Impact factor: 5.239

7.  Chromosome size-correlated and chromosome size-uncorrelated homogenization of centromeric repetitive sequences in New World quails.

Authors:  Satoshi Ishishita; Yuri Tsuruta; Yoshinobu Uno; Atsushi Nakamura; Chizuko Nishida; Darren K Griffin; Masaoki Tsudzuki; Tamao Ono; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2014-04       Impact factor: 5.239

Review 8.  Role of Chromosome Changes in Crocodylus Evolution and Diversity.

Authors:  Kornsorn Srikulnath; Watcharaporn Thapana; Narongrit Muangmai
Journal:  Genomics Inform       Date:  2015-12-31

9.  Lack of satellite DNA species-specific homogenization and relationship to chromosomal rearrangements in monitor lizards (Varanidae, Squamata).

Authors:  Ornjira Prakhongcheep; Watcharaporn Thapana; Aorarat Suntronpong; Worapong Singchat; Khampee Pattanatanang; Rattanin Phatcharakullawarawat; Narongrit Muangmai; Surin Peyachoknagul; Kazumi Matsubara; Tariq Ezaz; Kornsorn Srikulnath
Journal:  BMC Evol Biol       Date:  2017-08-16       Impact factor: 3.260

10.  Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds.

Authors:  Erika S Tavares; Allan J Baker
Journal:  BMC Evol Biol       Date:  2008-03-09       Impact factor: 3.260

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