Literature DB >> 12486007

The DNA chaperone HMGB1 facilitates ACF/CHRAC-dependent nucleosome sliding.

Tiziana Bonaldi1, Gernot Längst, Ralf Strohner, Peter B Becker, Marco E Bianchi.   

Abstract

Nucleosome remodelling complexes CHRAC and ACF contribute to chromatin dynamics by converting chemical energy into sliding of histone octamers on DNA. Their shared ATPase subunit ISWI binds DNA at the sites of entry into the nucleosome. A prevalent model assumes that DNA distortions catalysed by ISWI are converted into relocation of DNA relative to a histone octamer. HMGB1, one of the most abundant nuclear non-histone proteins, binds with preference to distorted DNA. We have now found that transient interaction of HMGB1 with nucleosomal linker DNA overlapping ISWI-binding sites enhances the ability of ACF to bind nucleosomal DNA and accelerates the sliding activity of limiting concentrations of remodelling factor. By contrast, an HMGB1 mutant with increased binding affinity was inhibitory. These observations are consistent with a role for HMGB1 as a DNA chaperone facilitating the rate-limiting DNA distortion during nucleosome remodelling.

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Year:  2002        PMID: 12486007      PMCID: PMC139112          DOI: 10.1093/emboj/cdf692

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  65 in total

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Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 2.  Flexing DNA: HMG-box proteins and their partners.

Authors:  M E Bianchi; M Beltrame
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3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  DNA looping by the HMG-box domains of HMG1 and modulation of DNA binding by the acidic C-terminal domain.

Authors:  M Stros; J Stokrová; J O Thomas
Journal:  Nucleic Acids Res       Date:  1994-03-25       Impact factor: 16.971

5.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

6.  Domain-domain interactions in high mobility group 1 protein (HMG1).

Authors:  J Ramstein; D Locker; M E Bianchi; M Leng
Journal:  Eur J Biochem       Date:  1999-03

7.  The effect of the acidic tail on the DNA-binding properties of the HMG1,2 class of proteins: insights from tail switching and tail removal.

Authors:  K B Lee; J O Thomas
Journal:  J Mol Biol       Date:  2000-11-24       Impact factor: 5.469

8.  Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin.

Authors:  G Mizuguchi; T Tsukiyama; J Wisniewski; C Wu
Journal:  Mol Cell       Date:  1997-12       Impact factor: 17.970

9.  Evidence for a shared structural role for HMG1 and linker histones B4 and H1 in organizing chromatin.

Authors:  K Nightingale; S Dimitrov; R Reeves; A P Wolffe
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

10.  The HMG-domain protein BAP111 is important for the function of the BRM chromatin-remodeling complex in vivo.

Authors:  O Papoulas; G Daubresse; J A Armstrong; J Jin; M P Scott; J W Tamkun
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

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  89 in total

Review 1.  Priming the nucleosome: a role for HMGB proteins?

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Journal:  EMBO Rep       Date:  2003-02       Impact factor: 8.807

2.  The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling.

Authors:  Heather Szerlong; Anjanabha Saha; Bradley R Cairns
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3.  Monocytic cells hyperacetylate chromatin protein HMGB1 to redirect it towards secretion.

Authors:  Tiziana Bonaldi; Fabio Talamo; Paola Scaffidi; Denise Ferrera; Annalisa Porto; Angela Bachi; Anna Rubartelli; Alessandra Agresti; Marco E Bianchi
Journal:  EMBO J       Date:  2003-10-15       Impact factor: 11.598

4.  Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins.

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Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

Review 5.  Basic concepts of epigenetics: impact of environmental signals on gene expression.

Authors:  Elizabeth A Mazzio; Karam F A Soliman
Journal:  Epigenetics       Date:  2012-02       Impact factor: 4.528

6.  Role of Nhp6 and Hmo1 in SWI/SNF occupancy and nucleosome landscape at gene regulatory regions.

Authors:  Matias I Hepp; Michaela Smolle; Cristian Gidi; Roberto Amigo; Nicole Valenzuela; Axel Arriagada; Alejandro Maureira; Madelaine M Gogol; Marcela Torrejón; Jerry L Workman; José L Gutiérrez
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-01-09       Impact factor: 4.490

7.  Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus.

Authors:  Dorte Launholt; Thomas Merkle; Andreas Houben; Alexander Schulz; Klaus D Grasser
Journal:  Plant Cell       Date:  2006-11-17       Impact factor: 11.277

Review 8.  The dynamics of HMG protein-chromatin interactions in living cells.

Authors:  Gabi Gerlitz; Robert Hock; Tetsuya Ueda; Michael Bustin
Journal:  Biochem Cell Biol       Date:  2009-02       Impact factor: 3.626

9.  Hypoxia-inducible Factor-1 (HIF-1)-independent hypoxia response of the small heat shock protein hsp-16.1 gene regulated by chromatin-remodeling factors in the nematode Caenorhabditis elegans.

Authors:  Jihyun Lee; Junho Lee
Journal:  J Biol Chem       Date:  2012-12-10       Impact factor: 5.157

10.  Dynamic and selective nucleosome repositioning during endotoxin tolerance.

Authors:  Mohamed El Gazzar; Tiefu Liu; Barbara K Yoza; Charles E McCall
Journal:  J Biol Chem       Date:  2009-11-09       Impact factor: 5.157

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