Literature DB >> 12471494

A framework for integrating the songbird brain.

E D Jarvis1, V A Smith, K Wada, M V Rivas, M McElroy, T V Smulders, P Carninci, Y Hayashizaki, F Dietrich, X Wu, P McConnell, J Yu, P P Wang, A J Hartemink, S Lin.   

Abstract

Biological systems by default involve complex components with complex relationships. To decipher how biological systems work, we assume that one needs to integrate information over multiple levels of complexity. The songbird vocal communication system is ideal for such integration due to many years of ethological investigation and a discreet dedicated brain network. Here we announce the beginnings of a songbird brain integrative project that involves high-throughput, molecular, anatomical, electrophysiological and behavioral levels of analysis. We first formed a rationale for inclusion of specific biological levels of analysis, then developed high-throughput molecular technologies on songbird brains, developed technologies for combined analysis of electrophysiological activity and gene regulation in awake behaving animals, and developed bioinformatic tools that predict causal interactions within and between biological levels of organization. This integrative brain project is fitting for the interdisciplinary approaches taken in the current songbird issue of the Journal of Comparative Physiology A and is expected to be conducive to deciphering how brains generate and perceive complex behaviors.

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Year:  2002        PMID: 12471494      PMCID: PMC2509580          DOI: 10.1007/s00359-002-0358-y

Source DB:  PubMed          Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol        ISSN: 0340-7594            Impact factor:   1.836


  80 in total

1.  Post-transcriptional regulation of zenk expression associated with zebra finch vocal development.

Authors:  O Whitney; K Soderstrom; F Johnson
Journal:  Brain Res Mol Brain Res       Date:  2000-09-15

2.  Behaviourally driven gene expression reveals song nuclei in hummingbird brain.

Authors:  E D Jarvis; S Ribeiro; M L da Silva; D Ventura; J Vielliard; C V Mello
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

3.  Different subthreshold mechanisms underlie song selectivity in identified HVc neurons of the zebra finch.

Authors:  R Mooney
Journal:  J Neurosci       Date:  2000-07-15       Impact factor: 6.167

4.  For whom the bird sings: context-dependent gene expression.

Authors:  E D Jarvis; C Scharff; M R Grossman; J A Ramos; F Nottebohm
Journal:  Neuron       Date:  1998-10       Impact factor: 17.173

Review 5.  Options available--from start to finish--for obtaining expression data by microarray.

Authors:  D D Bowtell
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

6.  Normalization and subtraction: two approaches to facilitate gene discovery.

Authors:  M F Bonaldo; G Lennon; M B Soares
Journal:  Genome Res       Date:  1996-09       Impact factor: 9.043

7.  Molecular mapping of brain areas involved in parrot vocal communication.

Authors:  E D Jarvis; C V Mello
Journal:  J Comp Neurol       Date:  2000-03-27       Impact factor: 3.215

8.  Functional annotation of a full-length mouse cDNA collection.

Authors:  J Kawai; A Shinagawa; K Shibata; M Yoshino; M Itoh; Y Ishii; T Arakawa; A Hara; Y Fukunishi; H Konno; J Adachi; S Fukuda; K Aizawa; M Izawa; K Nishi; H Kiyosawa; S Kondo; I Yamanaka; T Saito; Y Okazaki; T Gojobori; H Bono; T Kasukawa; R Saito; K Kadota; H Matsuda; M Ashburner; S Batalov; T Casavant; W Fleischmann; T Gaasterland; C Gissi; B King; H Kochiwa; P Kuehl; S Lewis; Y Matsuo; I Nikaido; G Pesole; J Quackenbush; L M Schriml; F Staubli; R Suzuki; M Tomita; L Wagner; T Washio; K Sakai; T Okido; M Furuno; H Aono; R Baldarelli; G Barsh; J Blake; D Boffelli; N Bojunga; P Carninci; M F de Bonaldo; M J Brownstein; C Bult; C Fletcher; M Fujita; M Gariboldi; S Gustincich; D Hill; M Hofmann; D A Hume; M Kamiya; N H Lee; P Lyons; L Marchionni; J Mashima; J Mazzarelli; P Mombaerts; P Nordone; B Ring; M Ringwald; I Rodriguez; N Sakamoto; H Sasaki; K Sato; C Schönbach; T Seya; Y Shibata; K F Storch; H Suzuki; K Toyo-oka; K H Wang; C Weitz; C Whittaker; L Wilming; A Wynshaw-Boris; K Yoshida; Y Hasegawa; H Kawaji; S Kohtsuki; Y Hayashizaki
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

9.  Immediate-early gene responses in the avian song control system: cloning and expression analysis of the canary c-jun cDNA.

Authors:  K L Nastiuk; C V Mello; J M George; D F Clayton
Journal:  Brain Res Mol Brain Res       Date:  1994-12

10.  Choreography of song, dance and beak movements in the zebra finch (Taeniopygia guttata).

Authors:  H Williams
Journal:  J Exp Biol       Date:  2001-10       Impact factor: 3.312

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  8 in total

Review 1.  Songbirds and the revised avian brain nomenclature.

Authors:  Anton Reiner; David J Perkel; Claudio V Mello; Erich D Jarvis
Journal:  Ann N Y Acad Sci       Date:  2004-06       Impact factor: 5.691

2.  A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.

Authors:  Kazuhiro Wada; Jason T Howard; Patrick McConnell; Osceola Whitney; Thierry Lints; Miriam V Rivas; Haruhito Horita; Michael A Patterson; Stephanie A White; Constance Scharff; Sebastian Haesler; Shengli Zhao; Hironobu Sakaguchi; Masatoshi Hagiwara; Toshiyuki Shiraki; Tomoko Hirozane-Kishikawa; Pate Skene; Yoshihide Hayashizaki; Piero Carninci; Erich D Jarvis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-03       Impact factor: 11.205

3.  Dynamic gene expression in the song system of zebra finches during the song learning period.

Authors:  Christopher R Olson; Lisa K Hodges; Claudio V Mello
Journal:  Dev Neurobiol       Date:  2015-03-20       Impact factor: 3.964

Review 4.  Singing-driven gene expression in the developing songbird brain.

Authors:  Frank Johnson; Osceola Whitney
Journal:  Physiol Behav       Date:  2005-08-29

Review 5.  Learned birdsong and the neurobiology of human language.

Authors:  Erich D Jarvis
Journal:  Ann N Y Acad Sci       Date:  2004-06       Impact factor: 5.691

6.  Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location.

Authors:  Tom V Smulders; Erich D Jarvis
Journal:  Neurobiol Learn Mem       Date:  2013-08-30       Impact factor: 2.877

7.  Computational inference of neural information flow networks.

Authors:  V Anne Smith; Jing Yu; Tom V Smulders; Alexander J Hartemink; Erich D Jarvis
Journal:  PLoS Comput Biol       Date:  2006-10-12       Impact factor: 4.475

8.  Convergent transcriptional specializations in the brains of humans and song-learning birds.

Authors:  Andreas R Pfenning; Erina Hara; Osceola Whitney; Miriam V Rivas; Rui Wang; Petra L Roulhac; Jason T Howard; Morgan Wirthlin; Peter V Lovell; Ganeshkumar Ganapathy; Jacquelyn Mouncastle; M Arthur Moseley; J Will Thompson; Erik J Soderblom; Atsushi Iriki; Masaki Kato; M Thomas P Gilbert; Guojie Zhang; Trygve Bakken; Angie Bongaarts; Amy Bernard; Ed Lein; Claudio V Mello; Alexander J Hartemink; Erich D Jarvis
Journal:  Science       Date:  2014-12-12       Impact factor: 47.728

  8 in total

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