Literature DB >> 12463891

Maximum entropy modeling for mining patient medication status from free text.

Serguei V Pakhomov1, Alexander Ruggieri, Christopher G Chute.   

Abstract

Using a classification scheme of patient medication status we sought to recognize and categorize medications mentioned in the unrestricted text of clinical documents generated in clinical practice. The categories refer to the patient's status with respect to the medication such as discontinuation, start or initiation, and continuation of a given medication. This categorization is performed with a machine learning technique, Maximum Entropy (ME), that is well suited to incorporating heterogeneous sources of information necessary for classifying patient's medication status. We use hand labeled training data to generate ME models and test 5 different training feature sets. Our results show that the most optimal feature set includes a combination of the following: two words preceding and following the mention of the drug, the subject of the sentence in which the drug mention occurs, the 2 words following the subject, and a binary feature vector of lexicalized semantic cues indicative of medication status or its change. The average predictive power of a model trained on these features is approximately 89%.

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Year:  2002        PMID: 12463891      PMCID: PMC2244576     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  14 in total

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Authors:  Naoki Nishimoto; Ayako Yagahara; Yuki Yokooka; Shintaro Tsuji; Masahito Uesugi; Katsuhiko Ogasawara; Masaji Maezawa
Journal:  Radiol Phys Technol       Date:  2010-05-22

2.  Medical facts to support inferencing in natural language processing.

Authors:  Thomas C Rindflesch; Serguei V Pakhomov; Marcelo Fiszman; Halil Kilicoglu; Vincent R Sanchez
Journal:  AMIA Annu Symp Proc       Date:  2005

3.  Classification of medication status change in clinical narratives.

Authors:  Sunghwan Sohn; Sean P Murphy; James J Masanz; Jean-Pierre A Kocher; Guergana K Savova
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

4.  TagLine: Information Extraction for Semi-Structured Text in Medical Progress Notes.

Authors:  Dezon K Finch; James A McCart; Stephen L Luther
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

5.  Using natural language processing methods to classify use status of dietary supplements in clinical notes.

Authors:  Yadan Fan; Rui Zhang
Journal:  BMC Med Inform Decis Mak       Date:  2018-07-23       Impact factor: 2.796

6.  Automated Extraction of Substance Use Information from Clinical Texts.

Authors:  Yan Wang; Elizabeth S Chen; Serguei Pakhomov; Elliot Arsoniadis; Elizabeth W Carter; Elizabeth Lindemann; Indra Neil Sarkar; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

7.  Classification of Use Status for Dietary Supplements in Clinical Notes.

Authors:  Yadan Fan; Lu He; Rui Zhang
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2017-01-19

8.  Modeling drug exposure data in electronic medical records: an application to warfarin.

Authors:  Mei Liu; Min Jiang; Vivian K Kawai; Charles M Stein; Dan M Roden; Joshua C Denny; Hua Xu
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

9.  A textual representation scheme for identifying clinical relationships in patient records.

Authors:  Rezarta Islamaj Doğan; Aurélie Névéol; Zhiyong Lu
Journal:  Proc Int Conf Mach Learn Appl       Date:  2011-02-04

10.  Identification of inactive medications in narrative medical text.

Authors:  Eugene M Breydo; Julia T Chu; Alexander Turchin
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06
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