Literature DB >> 21347081

Classification of medication status change in clinical narratives.

Sunghwan Sohn1, Sean P Murphy, James J Masanz, Jean-Pierre A Kocher, Guergana K Savova.   

Abstract

The patient's medication history and status changes play essential roles in medical treatment. A notable amount of medication status information typically resides in unstructured clinical narratives that require a sophisticated approach to automated classification. In this paper, we investigated rule-based and machine learning methods of medication status change classification from clinical free text. We also examined the impact of balancing training data in machine learning classification when using the data from skewed class distribution.

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Year:  2010        PMID: 21347081      PMCID: PMC3041444     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Maximum entropy modeling for mining patient medication status from free text.

Authors:  Serguei V Pakhomov; Alexander Ruggieri; Christopher G Chute
Journal:  Proc AMIA Symp       Date:  2002

2.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

3.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

4.  Mayo clinic smoking status classification system: extensions and improvements.

Authors:  Sunghwan Sohn; Guergana K Savova
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

5.  Extraction and mapping of drug names from free text to a standardized nomenclature.

Authors:  Matthew A Levin; Marina Krol; Ankur M Doshi; David L Reich
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  MedEx: a medication information extraction system for clinical narratives.

Authors:  Hua Xu; Shane P Stenner; Son Doan; Kevin B Johnson; Lemuel R Waitman; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2010 Jan-Feb       Impact factor: 4.497

7.  Optimal training sets for Bayesian prediction of MeSH assignment.

Authors:  Sunghwan Sohn; Won Kim; Donald C Comeau; W John Wilbur
Journal:  J Am Med Inform Assoc       Date:  2008-04-24       Impact factor: 4.497

8.  Identifying patient smoking status from medical discharge records.

Authors:  Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

9.  Mayo clinic NLP system for patient smoking status identification.

Authors:  Guergana K Savova; Philip V Ogren; Patrick H Duffy; James D Buntrock; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

  9 in total
  9 in total

1.  A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury.

Authors:  Casey Lynnette Overby; Jyotishman Pathak; Omri Gottesman; Krystl Haerian; Adler Perotte; Sean Murphy; Kevin Bruce; Stephanie Johnson; Jayant Talwalkar; Yufeng Shen; Steve Ellis; Iftikhar Kullo; Christopher Chute; Carol Friedman; Erwin Bottinger; George Hripcsak; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-07-09       Impact factor: 4.497

2.  Semantic annotation of clinical events for generating a problem list.

Authors:  Danielle L Mowery; Pamela Jordan; Janyce Wiebe; Henk Harkema; John Dowling; Wendy W Chapman
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

3.  Using natural language processing methods to classify use status of dietary supplements in clinical notes.

Authors:  Yadan Fan; Rui Zhang
Journal:  BMC Med Inform Decis Mak       Date:  2018-07-23       Impact factor: 2.796

4.  Classification of Use Status for Dietary Supplements in Clinical Notes.

Authors:  Yadan Fan; Lu He; Rui Zhang
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2017-01-19

5.  Modeling drug exposure data in electronic medical records: an application to warfarin.

Authors:  Mei Liu; Min Jiang; Vivian K Kawai; Charles M Stein; Dan M Roden; Joshua C Denny; Hua Xu
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

6.  Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives.

Authors:  Diwakar Mahajan; Jennifer J Liang; Ching-Huei Tsou
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

7.  Active neural networks to detect mentions of changes to medication treatment in social media.

Authors:  Davy Weissenbacher; Suyu Ge; Ari Klein; Karen O'Connor; Robert Gross; Sean Hennessy; Graciela Gonzalez-Hernandez
Journal:  J Am Med Inform Assoc       Date:  2021-11-25       Impact factor: 4.497

8.  Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.

Authors:  Jyotishman Pathak; Kent R Bailey; Calvin E Beebe; Steven Bethard; David C Carrell; Pei J Chen; Dmitriy Dligach; Cory M Endle; Lacey A Hart; Peter J Haug; Stanley M Huff; Vinod C Kaggal; Dingcheng Li; Hongfang Liu; Kyle Marchant; James Masanz; Timothy Miller; Thomas A Oniki; Martha Palmer; Kevin J Peterson; Susan Rea; Guergana K Savova; Craig R Stancl; Sunghwan Sohn; Harold R Solbrig; Dale B Suesse; Cui Tao; David P Taylor; Les Westberg; Stephen Wu; Ning Zhuo; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2013-11-04       Impact factor: 4.497

9.  Classifying Supplement Use Status in Clinical Notes.

Authors:  Yadan Fan; Lu He; Serguei V S Pakhomov; Genevieve B Melton; Rui Zhang
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2017-07-26
  9 in total

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