Literature DB >> 12458798

Functional siRNA expression from transfected PCR products.

Daniela Castanotto1, Haitang Li, John J Rossi.   

Abstract

RNA interference (RNAi) is a process in which double-stranded RNA (dsRNA) induces the postranscriptional degradation of homologous transcripts. RNAi can be initiated by exposing cells to dsRNA either via transfection or endogenous expression. In mammalian systems, the sequence-specific RNAi effect has been observed by expression of 21-23 base transcripts capable of forming duplexes, or via expression of short hairpin RNAs. We describe here a facile PCR based strategy for rapid synthesis of siRNA expression units and their testing in mammalian cells. The siRNA expression constructs are constructed by PCR, and the PCR products are directly transfected into mammalian cells resulting in functional expression of siRNAs. This approach should prove useful for identification of optimal siRNA-target combinations and for multiplexing siRNA expression in mammalian cells.

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Year:  2002        PMID: 12458798      PMCID: PMC1370351          DOI: 10.1017/s1355838202021362

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  14 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

2.  U6 promoter-driven siRNAs with four uridine 3' overhangs efficiently suppress targeted gene expression in mammalian cells.

Authors:  Makoto Miyagishi; Kazunari Taira
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

Review 3.  RNA interference: it's a small RNA world.

Authors:  E G Moss
Journal:  Curr Biol       Date:  2001-10-02       Impact factor: 10.834

4.  Argonaute2, a link between genetic and biochemical analyses of RNAi.

Authors:  S M Hammond; S Boettcher; A A Caudy; R Kobayashi; G J Hannon
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

5.  Gene silencing using micro-RNA designed hairpins.

Authors:  Michael T McManus; Christian P Petersen; Brian B Haines; Jianzhu Chen; Phillip A Sharp
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

6.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

7.  A system for stable expression of short interfering RNAs in mammalian cells.

Authors:  Thijn R Brummelkamp; René Bernards; Reuven Agami
Journal:  Science       Date:  2002-03-21       Impact factor: 47.728

8.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

9.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

10.  Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor.

Authors:  Torgeir Holen; Mohammed Amarzguioui; Merete T Wiiger; Eshrat Babaie; Hans Prydz
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

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  38 in total

1.  Identification of effective siRNA against K-ras in human pancreatic cancer cell line MiaPaCa-2 by siRNA expression cassette.

Authors:  Wei Wang; Chun-You Wang; Ju-Hua Dong; Xiong Chen; Min Zhang; Gang Zhao
Journal:  World J Gastroenterol       Date:  2005-04-07       Impact factor: 5.742

2.  Gene silencing in adult rat cardiac myocytes in vitro by adenovirus-mediated RNA interference.

Authors:  Andreas Rinne; Christoph Littwitz; Marie-Cécile Kienitz; Andreas Gmerek; Leif I Bösche; Lutz Pott; Kirsten Bender
Journal:  J Muscle Res Cell Motil       Date:  2006-07-28       Impact factor: 2.698

3.  Short hairpin RNA causes the methylation of transforming growth factor-beta receptor II promoter and silencing of the target gene in rat hepatic stellate cells.

Authors:  Jin-Wook Kim; Yan-Hong Zhang; Mark A Zern; John J Rossi; Jian Wu
Journal:  Biochem Biophys Res Commun       Date:  2007-05-22       Impact factor: 3.575

4.  RNA interference: A futuristic tool and its therapeutic applications.

Authors:  Anghesom Ambesajir; Atul Kaushik; Jeevan J Kaushik; Sham T Petros
Journal:  Saudi J Biol Sci       Date:  2012-08-17       Impact factor: 4.219

5.  Direct selection for ribozyme cleavage activity in cells.

Authors:  Xi Chen; Lisa Denison; Matthew Levy; Andrew D Ellington
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

6.  An approach to genomewide screens of expressed small interfering RNAs in mammalian cells.

Authors:  Lianxing Zheng; Jun Liu; Sergei Batalov; Demin Zhou; Anthony Orth; Sheng Ding; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-19       Impact factor: 11.205

7.  A dual function TAR Decoy serves as an anti-HIV siRNA delivery vehicle.

Authors:  Hoshang J Unwalla; John J Rossi
Journal:  Virol J       Date:  2010-02-10       Impact factor: 4.099

8.  Design of RNAi hairpins for mutation-specific silencing of ataxin-7 and correction of a SCA7 phenotype.

Authors:  Janine Scholefield; L Jacquie Greenberg; Marc S Weinberg; Patrick B Arbuthnot; Amr Abdelgany; Matthew J A Wood
Journal:  PLoS One       Date:  2009-09-30       Impact factor: 3.240

9.  Vector-based siRNA delivery strategies for high-throughput screening of novel target genes.

Authors:  Meihong Chen; Quan Du; Hong-Yan Zhang; Claes Wahlestedt; Zicai Liang
Journal:  J RNAi Gene Silencing       Date:  2005-07-27

10.  A strategy for constructing and verifying short hairpin RNA expression vectors.

Authors:  Fang-Jun Jia; Mei Huang; Yuan-Chang Yan; Yi-Ping Li
Journal:  J RNAi Gene Silencing       Date:  2007-01-23
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