Literature DB >> 12458080

Coenzymes as coribozymes.

Vasant R Jadhav1, Michael Yarus.   

Abstract

Coenzymes are small organic molecules that supply a varied set of reactive groups to protein enzymes, thereby diversifying catalysis beyond the chemistries of amino acid sidechains. As RNA structures begin with a more limited chemical diversity than proteins, it seems likely that RNA enzymes would also use functional groups from other molecules to support a complex RNA world metabolism. In fact, ribonucleotide moieties in many coenzymes have long been thought to be surviving vestiges of covalently bound coenzymes in an RNA world. The idea of coenzyme utilization by ribozymes can be explored by selection-amplification of coenzyme-binding RNAs and coenzyme-assisted ribozymes. Here, we review coenzyme-RNAs, and discuss their possible significance for RNA-mediated metabolism. In summary, a plausible route from prebiotic chemistry to ribozyme biochemistry exists for CoA, and via similar activities, likely exists for all the nucleotidyl coenzymes.

Mesh:

Substances:

Year:  2002        PMID: 12458080     DOI: 10.1016/s0300-9084(02)01404-9

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  20 in total

Review 1.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

Review 2.  How was membrane permeability produced in an RNA world?

Authors:  Alexander Vlassov
Journal:  Orig Life Evol Biosph       Date:  2005-04       Impact factor: 1.950

Review 3.  The RNA world on ice: a new scenario for the emergence of RNA information.

Authors:  Alexander V Vlassov; Sergei A Kazakov; Brian H Johnston; Laura F Landweber
Journal:  J Mol Evol       Date:  2005-07-13       Impact factor: 2.395

4.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

5.  Signature of a primitive genetic code in ancient protein lineages.

Authors:  Gregory P Fournier; J Peter Gogarten
Journal:  J Mol Evol       Date:  2007-10-06       Impact factor: 2.395

6.  Origins and emergent evolution of life: the colloid microsphere hypothesis revisited.

Authors:  Richard Egel
Journal:  Orig Life Evol Biosph       Date:  2014-09-11       Impact factor: 1.950

7.  A Proposal of the Ur-proteome.

Authors:  Miryam Palacios-Pérez; Fernando Andrade-Díaz; Marco V José
Journal:  Orig Life Evol Biosph       Date:  2017-11-10       Impact factor: 1.950

8.  In the Beginning was a Mutualism - On the Origin of Translation.

Authors:  Marko Vitas; Andrej Dobovišek
Journal:  Orig Life Evol Biosph       Date:  2018-04-30       Impact factor: 1.950

Review 9.  RNA sensors: novel regulators of gene expression.

Authors:  Raymond Kaempfer
Journal:  EMBO Rep       Date:  2003-11       Impact factor: 8.807

10.  Nontemplate-driven polymers: clues to a minimal form of organization closure at the early stages of living systems.

Authors:  Miguel Ángel Freire
Journal:  Theory Biosci       Date:  2015-04-28       Impact factor: 1.919

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