Literature DB >> 12430596

Application of orthogonal signal correction to minimise the effects of physical and biological variation in high resolution 1H NMR spectra of biofluids.

Bridgette M Beckwith-Hall1, Joanne T Brindle, Richard H Barton, Muireann Coen, Elaine Holmes, Jeremy K Nicholson, Henrik Antti.   

Abstract

1H nuclear magnetic resonance (NMR)-based metabonomics is a well-established technique used to analyse and interpret complex multiparametric metabolic data, and has a wide number of applications in the development of pharmaceuticals. However, interpretation of biological data can be confounded by extraneous variation in the data such as fluctuations in either experimental conditions or in physiological status. Here we have shown the novel application of a data filtering method, orthogonal signal correction (OSC), to biofluid NMR data to minimise the influence of inter- and intra-spectrometer variation during data acquisition, and also to minimise innate physiological variation. The removal of orthogonal variation exposed features of interest in the NMR data and facilitated interpretation of the derived multivariate models. Furthermore, analysis of the orthogonal variation provided an explanation of the systematic analytical/biological changes responsible for confounding the original NMR data.

Entities:  

Mesh:

Year:  2002        PMID: 12430596     DOI: 10.1039/b205128c

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  11 in total

1.  Individual variation in macronutrient regulation measured by proton magnetic resonance spectroscopy of human plasma.

Authors:  Youngja Park; Seoung Bum Kim; Bing Wang; Roberto A Blanco; Ngoc-Anh Le; Shaoxiong Wu; Carolyn J Accardi; R Wayne Alexander; Thomas R Ziegler; Dean P Jones
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2009-05-20       Impact factor: 3.619

2.  Malignancy prediction among tissues from Oral SCC patients including neck invasions: a 1H HRMAS NMR based metabolomic study.

Authors:  Anup Paul; Shatakshi Srivastava; Raja Roy; Akshay Anand; Kushagra Gaurav; Nuzhat Husain; Sudha Jain; Abhinav A Sonkar
Journal:  Metabolomics       Date:  2020-03-11       Impact factor: 4.290

3.  Controlling the False Discovery Rate for Feature Selection in High-resolution NMR Spectra.

Authors:  Seoung Bum Kim; Victoria C P Chen; Youngja Park; Thomas R Ziegler; Dean P Jones
Journal:  Stat Anal Data Min       Date:  2008-06       Impact factor: 1.051

4.  Metabolomics in Exercise and Sports: A Systematic Review.

Authors:  Kayvan Khoramipour; Øyvind Sandbakk; Ammar Hassanzadeh Keshteli; Abbas Ali Gaeini; David S Wishart; Karim Chamari
Journal:  Sports Med       Date:  2021-10-30       Impact factor: 11.136

Review 5.  Metabolomics-based methods for early disease diagnostics.

Authors:  G A Nagana Gowda; Shucha Zhang; Haiwei Gu; Vincent Asiago; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Expert Rev Mol Diagn       Date:  2008-09       Impact factor: 5.225

6.  Biomarker Discovery and Translation in Metabolomics.

Authors:  G A Nagana Gowda; D Raftery
Journal:  Curr Metabolomics       Date:  2013

7.  Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.

Authors:  Yong Wang; Qiao-Feng Wu; Chen Chen; Ling-Yun Wu; Xian-Zhong Yan; Shu-Guang Yu; Xiang-Sun Zhang; Fan-Rong Liang
Journal:  BMC Syst Biol       Date:  2012-07-16

8.  1H-NMR-based metabolic analysis of human serum reveals novel markers of myocardial energy expenditure in heart failure patients.

Authors:  Zhiyong Du; Anna Shen; Yuli Huang; Liang Su; Wenyan Lai; Peng Wang; Zhibing Xie; Zhiquan Xie; Qingchun Zeng; Hao Ren; Dingli Xu
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

9.  NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

10.  Advantage of Applying OSC to (1)H NMR-Based Metabonomic Data of Celiac Disease.

Authors:  Mostafa Rezaei-Tavirani; Fariba Fathi; Fatemeh Darvizeh; Mohamad Reza Zali; Mohamad Rostami Nejad; Kamran Rostami; Mohsen Tafazzoli; Afsaneh Arefi Oskouie; Seyed Abdolreza Mortazavi-Tabatabaei
Journal:  Int J Endocrinol Metab       Date:  2012-06-30
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.