Literature DB >> 18785810

Metabolomics-based methods for early disease diagnostics.

G A Nagana Gowda1, Shucha Zhang, Haiwei Gu, Vincent Asiago, Narasimhamurthy Shanaiah, Daniel Raftery.   

Abstract

The emerging field of metabolomics, in which a large number of small-molecule metabolites from body fluids or tissues are detected quantitatively in a single step, promises immense potential for early diagnosis, therapy monitoring and for understanding the pathogenesis of many diseases. Metabolomics methods are mostly focused on the information-rich analytical techniques of NMR spectroscopy and mass spectrometry (MS). Analysis of the data from these high-resolution methods using advanced chemometric approaches provides a powerful platform for translational and clinical research and diagnostic applications. In this review, the current trends and recent advances in NMR- and MS-based metabolomics are described with a focus on the development of advanced NMR and MS methods, improved multivariate statistical data analysis and recent applications in the area of cancer, diabetes, inborn errors of metabolism and cardiovascular diseases.

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Year:  2008        PMID: 18785810      PMCID: PMC3890417          DOI: 10.1586/14737159.8.5.617

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  126 in total

1.  Non-destructive quantitation of spermine in human prostate tissue samples using HRMAS 1H NMR spectroscopy at 9.4 T.

Authors:  L L Cheng; C Wu; M R Smith; R G Gonzalez
Journal:  FEBS Lett       Date:  2001-04-06       Impact factor: 4.124

2.  Quantification of plasma lipoproteins by proton nuclear magnetic resonance spectroscopy.

Authors:  J D Otvos; E J Jeyarajah; D W Bennett
Journal:  Clin Chem       Date:  1991-03       Impact factor: 8.327

3.  Statistical total correlation spectroscopy: an exploratory approach for latent biomarker identification from metabolic 1H NMR data sets.

Authors:  Olivier Cloarec; Marc-Emmanuel Dumas; Andrew Craig; Richard H Barton; Johan Trygg; Jane Hudson; Christine Blancher; Dominique Gauguier; John C Lindon; Elaine Holmes; Jeremy Nicholson
Journal:  Anal Chem       Date:  2005-03-01       Impact factor: 6.986

4.  Diagnosing diabetic nephropathy by 1H NMR metabonomics of serum.

Authors:  Ville-Petteri Mäkinen; Pasi Soininen; Carol Forsblom; Maija Parkkonen; Petri Ingman; Kimmo Kaski; Per-Henrik Groop; Mika Ala-Korpela
Journal:  MAGMA       Date:  2006-12-15       Impact factor: 2.310

5.  Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics.

Authors:  Anders Nordström; Elizabeth Want; Trent Northen; Janne Lehtiö; Gary Siuzdak
Journal:  Anal Chem       Date:  2007-12-18       Impact factor: 6.986

6.  Evaluating human breast ductal carcinomas with high-resolution magic-angle spinning proton magnetic resonance spectroscopy.

Authors:  L L Cheng; I W Chang; B L Smith; R G Gonzalez
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

7.  Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice.

Authors:  Marc-Emmanuel Dumas; Richard H Barton; Ayo Toye; Olivier Cloarec; Christine Blancher; Alice Rothwell; Jane Fearnside; Roger Tatoud; Véronique Blanc; John C Lindon; Steve C Mitchell; Elaine Holmes; Mark I McCarthy; James Scott; Dominique Gauguier; Jeremy K Nicholson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-08       Impact factor: 11.205

8.  Principal component analysis of urine metabolites detected by NMR and DESI-MS in patients with inborn errors of metabolism.

Authors:  Zhengzheng Pan; Haiwei Gu; Nari Talaty; Huanwen Chen; Narasimhamurthy Shanaiah; Bryan E Hainline; R Graham Cooks; Daniel Raftery
Journal:  Anal Bioanal Chem       Date:  2006-07-05       Impact factor: 4.142

9.  Matrix-suppressed laser desorption/ionisation mass spectrometry and its suitability for metabolome analyses.

Authors:  Seetharaman Vaidyanathan; Simon Gaskell; Royston Goodacre
Journal:  Rapid Commun Mass Spectrom       Date:  2006       Impact factor: 2.419

10.  Metabolic mapping by use of high-resolution magic angle spinning 1H MR spectroscopy for assessment of apoptosis in cervical carcinomas.

Authors:  Heidi Lyng; Beathe Sitter; Tone F Bathen; Line R Jensen; Kolbein Sundfør; Gunnar B Kristensen; Ingrid S Gribbestad
Journal:  BMC Cancer       Date:  2007-01-17       Impact factor: 4.430

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  203 in total

1.  Use of optimized 1D TOCSY NMR for improved quantitation and metabolomic analysis of biofluids.

Authors:  Peter Sandusky; Emmanuel Appiah-Amponsah; Daniel Raftery
Journal:  J Biomol NMR       Date:  2011-03-10       Impact factor: 2.835

2.  Revealing the metabonomic variation of EC using ¹H-NMR spectroscopy and its association with the clinicopathological characteristics.

Authors:  Ayshamgul Hasim; Hong Ma; Batur Mamtimin; Abulizi Abudula; Madiniyet Niyaz; Li-Wei Zhang; Juret Anwer; Ilyar Sheyhidin
Journal:  Mol Biol Rep       Date:  2012-06-27       Impact factor: 2.316

3.  Global metabolic profiling procedures for urine using UPLC-MS.

Authors:  Elizabeth J Want; Ian D Wilson; Helen Gika; Georgios Theodoridis; Robert S Plumb; John Shockcor; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2010-06       Impact factor: 13.491

4.  Mass spectrometric signatures of the blood plasma metabolome for disease diagnostics.

Authors:  Petr G Lokhov; Elena E Balashova; Anna A Voskresenskaya; Oxana P Trifonova; Dmitry L Maslov; Alexander I Archakov
Journal:  Biomed Rep       Date:  2015-11-24

Review 5.  The utility of metabolomics in natural product and biomarker characterization.

Authors:  Daniel G Cox; Joonseok Oh; Adam Keasling; Kim L Colson; Mark T Hamann
Journal:  Biochim Biophys Acta       Date:  2014-08-20

Review 6.  Advances in metabolomics of thyroid cancer diagnosis and metabolic regulation.

Authors:  Raziyeh Abooshahab; Morteza Gholami; Maryam Sanoie; Fereidoun Azizi; Mehdi Hedayati
Journal:  Endocrine       Date:  2019-04-01       Impact factor: 3.633

7.  Extending the Scope of 1H NMR Spectroscopy for the Analysis of Cellular Coenzyme A and Acetyl Coenzyme A.

Authors:  G A Nagana Gowda; Lauren Abell; Rong Tian
Journal:  Anal Chem       Date:  2019-01-17       Impact factor: 6.986

8.  Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression.

Authors:  Chen Chen; Lingli Deng; Siwei Wei; G A Nagana Gowda; Haiwei Gu; Elena G Chiorean; Mohammad Abu Zaid; Marietta L Harrison; Joseph F Pekny; Patrick J Loehrer; Dabao Zhang; Min Zhang; Daniel Raftery
Journal:  J Proteome Res       Date:  2015-05-13       Impact factor: 4.466

9.  Probing the metabolic aberrations underlying mutant huntingtin toxicity in yeast and assessing their degree of preservation in humans and mice.

Authors:  P Matthew Joyner; Ronni M Matheke; Lindsey M Smith; Robert H Cichewicz
Journal:  J Proteome Res       Date:  2010-01       Impact factor: 4.466

10.  Interdependence of signal processing and analysis of urine 1H NMR spectra for metabolic profiling.

Authors:  Shucha Zhang; Cheng Zheng; Ian R Lanza; K Sreekumaran Nair; Daniel Raftery; Olga Vitek
Journal:  Anal Chem       Date:  2009-08-01       Impact factor: 6.986

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