Literature DB >> 12426346

A third transposable element, ISPpu12, from the toluene-xylene catabolic plasmid pWW0 of Pseudomonas putida mt-2.

Peter A Williams1, Rheinallt M Jones, Linda E Shaw.   

Abstract

A 3,372-bp insertion sequence, ISPpu12, has been identified on the archetypal toluene-xylene TOL catabolic plasmid pWW0 from Pseudomonas putida mt-2. The insertion sequence element is located on the plasmid between bases 84397 and 87768 in a region which also contains the termini and transposase genes of the catabolic transposons Tn4651 and Tn4653 (A. Greated, L. Lambertson, P. A. Williams, and C. M. Thomas, Environ. Microbiol., in press). ISPpu12 has terminal inverted repeats of 24 bp with three mismatches and contains four open reading frames, a tnpA homologue and three open reading frames (lspA, orf1, and orf2) of undetermined function. After insertion in vitro of a Km(r) cassette into ISPpu12 either in the intergenic region between orf1 and orf2 or directly into the orf1 gene and ligation into a suicide vector, the modified ISPpu12-Km transposes at high frequency, often in multiple copies, into the chromosome of a P. putida recipient. Inactivation of lspA, orf1, and orf2 by introducing a 7-bp deletion into the 5' region of each gene had no major effect upon transposition, but a similar mutation of tnpA completely eliminated transposition. Analysis of the literature and of strains derived from the chlorobenzoate-degrading Pseudomonas sp. strain B13 suggests that the promiscuity of this element has played an important role in the history of plasmid pWW0. Database comparisons and the accompanying paper (A. J. Weightman, A. W. Topping, K. E. Hill, L. L. Lee, K. Sakai, J. H. Slater, and A. W. Thomas, J. Bacteriol. 184:6581-6591, 2002) show that ISPpu12 is a transposable element also found in other bacteria.

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Year:  2002        PMID: 12426346      PMCID: PMC135414          DOI: 10.1128/JB.184.23.6572-6580.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  33 in total

1.  A cleavage map of the TOL plasmid of Pseudomonas putida mt-2.

Authors:  R Downing; P Broda
Journal:  Mol Gen Genet       Date:  1979

2.  Two modes of loss of the Tol function from Pseudomonas putida mt-2.

Authors:  S A Bayley; C J Duggleby; M J Worsey; P A Williams; K G Hardy; P Broda
Journal:  Mol Gen Genet       Date:  1977-07-20

3.  Construction of haloaromatics utilising bacteria.

Authors:  W Reineke; H J Knackmuss
Journal:  Nature       Date:  1979-02-01       Impact factor: 49.962

4.  An endonuclease cleavage map of the plasmid pWWO-8, a derivative of the TOL plasmid of Pseudomonas putida mt-2.

Authors:  R G Downing; C J Duggleby; R Villems; P Broda
Journal:  Mol Gen Genet       Date:  1979-01-05

5.  Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing.

Authors:  Andrew J Weightman; Andrew W Topping; Katja E Hill; Li Ling Lee; Kenji Sakai; J Howard Slater; Andrew W Thomas
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

6.  Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid.

Authors:  M J Worsey; P A Williams
Journal:  J Bacteriol       Date:  1975-10       Impact factor: 3.490

7.  Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida.

Authors:  Alicia Greated; Lotte Lambertsen; Peter A Williams; Christopher M Thomas
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

8.  Isolation of a mutant TOL plasmid with increased activity and transmissibility from Pseudomonas putida (arvilla) mt-2.

Authors:  T Nakazawa; T Yokota
Journal:  J Bacteriol       Date:  1977-01       Impact factor: 3.490

9.  Isolation of TOL and RP4 recombinants by integrative suppression.

Authors:  T Nakazawa; E Hayashi; T Yokota; Y Ebina; A Nakazawa
Journal:  J Bacteriol       Date:  1978-04       Impact factor: 3.490

10.  Hybrid pathway for chlorobenzoate metabolism in Pseudomonas sp. B13 derivatives.

Authors:  W Reineke; H J Knackmuss
Journal:  J Bacteriol       Date:  1980-05       Impact factor: 3.490

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  12 in total

1.  Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant Acinetobacter baumannii strain.

Authors:  Mandira Kochar; Marialuisa Crosatti; Ewan M Harrison; Barbara Rieck; Jacqueline Chan; Chrystala Constantinidou; Mark Pallen; Hong-Yu Ou; Kumar Rajakumar
Journal:  Antimicrob Agents Chemother       Date:  2012-01-30       Impact factor: 5.191

2.  Comparative genomic analysis and benzene, toluene, ethylbenzene, and o-, m-, and p-xylene (BTEX) degradation pathways of Pseudoxanthomonas spadix BD-a59.

Authors:  Eun Jin Choi; Hyun Mi Jin; Seung Hyeon Lee; Renukaradhya K Math; Eugene L Madsen; Che Ok Jeon
Journal:  Appl Environ Microbiol       Date:  2012-11-16       Impact factor: 4.792

3.  MiniUIB, a novel minitransposon-based system for stable insertion of foreign DNA into the genomes of Gram-negative and Gram-positive bacteria.

Authors:  Joseph Alexander Christie-Oleza; Isabel Brunet-Galmés; Jorge Lalucat; Balbina Nogales; Rafael Bosch
Journal:  Appl Environ Microbiol       Date:  2012-12-28       Impact factor: 4.792

4.  Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.

Authors:  Patrick S G Chain; Vincent J Denef; Konstantinos T Konstantinidis; Lisa M Vergez; Loreine Agulló; Valeria Latorre Reyes; Loren Hauser; Macarena Córdova; Luis Gómez; Myriam González; Miriam Land; Victoria Lao; Frank Larimer; John J LiPuma; Eshwar Mahenthiralingam; Stephanie A Malfatti; Christopher J Marx; J Jacob Parnell; Alban Ramette; Paul Richardson; Michael Seeger; Daryl Smith; Theodore Spilker; Woo Jun Sul; Tamara V Tsoi; Luke E Ulrich; Igor B Zhulin; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

5.  Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing.

Authors:  Andrew J Weightman; Andrew W Topping; Katja E Hill; Li Ling Lee; Kenji Sakai; J Howard Slater; Andrew W Thomas
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

6.  TnpR encoded by an ISPpu12 isoform regulates transposition of two different ISL3-like insertion sequences in Pseudomonas stutzeri after conjugative interaction.

Authors:  J A Christie-Oleza; B Nogales; J Lalucat; R Bosch
Journal:  J Bacteriol       Date:  2010-01-08       Impact factor: 3.490

7.  Characterization of SXT/R391 Integrative and Conjugative Elements in Proteus mirabilis Isolates from Food-Producing Animals in China.

Authors:  Chang-Wei Lei; An-Yun Zhang; Hong-Ning Wang; Bi-Hui Liu; Li-Qin Yang; Yong-Qiang Yang
Journal:  Antimicrob Agents Chemother       Date:  2016-01-11       Impact factor: 5.191

Review 8.  Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.

Authors:  Xiao Wu; Sébastien Monchy; Safiyh Taghavi; Wei Zhu; Juan Ramos; Daniel van der Lelie
Journal:  FEMS Microbiol Rev       Date:  2011-03       Impact factor: 16.408

9.  Comparative genomics of multidrug resistance in Acinetobacter baumannii.

Authors:  Pierre-Edouard Fournier; David Vallenet; Valérie Barbe; Stéphane Audic; Hiroyuki Ogata; Laurent Poirel; Hervé Richet; Catherine Robert; Sophie Mangenot; Chantal Abergel; Patrice Nordmann; Jean Weissenbach; Didier Raoult; Jean-Michel Claverie
Journal:  PLoS Genet       Date:  2006-01-13       Impact factor: 5.917

10.  Structure and evolution of chlorate reduction composite transposons.

Authors:  Iain C Clark; Ryan A Melnyk; Anna Engelbrektson; John D Coates
Journal:  mBio       Date:  2013-08-06       Impact factor: 7.867

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