Literature DB >> 12424132

Ramachandran plot on the web.

S S Sheik1, P Sundararajan, A S Z Hussain, K Sekar.   

Abstract

A graphics package has been developed to display the main chain torsion angles phi, psi (phi, Psi); (Ramachandran angles) in a protein of known structure. In addition, the package calculates the Ramachandran angles at the central residue in the stretch of three amino acids having specified the flanking residue types. The package displays the Ramachandran angles along with a detailed analysis output. This software is incorporated with all the protein structures available in the Protein Databank.

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Year:  2002        PMID: 12424132     DOI: 10.1093/bioinformatics/18.11.1548

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  10 in total

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2.  Biphasic kinetics of the colchicine-tubulin interaction: role of amino acids surrounding the A ring of bound colchicine molecule.

Authors:  Suvroma Gupta; Mithu Banerjee; Asim Poddar; Asok Banerjee; Gautam Basu; Debjani Roy; Bhabatarak Bhattacharyya
Journal:  Biochemistry       Date:  2005-08-02       Impact factor: 3.162

3.  Purification of Zika virus RNA-dependent RNA polymerase and its use to identify small-molecule Zika inhibitors.

Authors:  Hong-Tao Xu; Said A Hassounah; Susan P Colby-Germinario; Maureen Oliveira; Clare Fogarty; Yudong Quan; Yingshan Han; Olga Golubkov; Ilinca Ibanescu; Bluma Brenner; Brent R Stranix; Mark A Wainberg
Journal:  J Antimicrob Chemother       Date:  2017-03-01       Impact factor: 5.790

4.  The R262K substitution combined with H51Y in HIV-1 subtype B integrase confers low-level resistance against dolutegravir.

Authors:  Vincent Cutillas; Thibault Mesplede; Kaitlin Anstett; Said Hassounah; Mark A Wainberg
Journal:  Antimicrob Agents Chemother       Date:  2014-10-27       Impact factor: 5.191

5.  Differential effects of the G118R, H51Y, and E138K resistance substitutions in different subtypes of HIV integrase.

Authors:  Peter K Quashie; Maureen Oliviera; Tamar Veres; Nathan Osman; Ying-Shan Han; Said Hassounah; Yolanda Lie; Wei Huang; Thibault Mesplède; Mark A Wainberg
Journal:  J Virol       Date:  2014-12-31       Impact factor: 5.103

6.  Molecular Characterization of Legionellosis Drug Target Candidate Enzyme Phosphoglucosamine Mutase from Legionella pneumophila (strain Paris): An In Silico Approach.

Authors:  Anayet Hasan; Habibul Hasan Mazumder; Arif Khan; Mohammad Uzzal Hossain; Homaun Kabir Chowdhury
Journal:  Genomics Inform       Date:  2014-12-31

7.  The Parkinson Disease gene SNCA: Evolutionary and structural insights with pathological implication.

Authors:  Irum Javaid Siddiqui; Nashaiman Pervaiz; Amir Ali Abbasi
Journal:  Sci Rep       Date:  2016-04-15       Impact factor: 4.379

8.  Evaluation of Sofosbuvir (β-D-2'-deoxy-2'-α-fluoro-2'-β-C-methyluridine) as an inhibitor of Dengue virus replication<sup/>.

Authors:  Hong-Tao Xu; Susan P Colby-Germinario; Said A Hassounah; Clare Fogarty; Nathan Osman; Navaneethan Palanisamy; Yingshan Han; Maureen Oliveira; Yudong Quan; Mark A Wainberg
Journal:  Sci Rep       Date:  2017-07-24       Impact factor: 4.379

9.  Biochemical and Molecular Dynamics Study of a Novel GH 43 α-l-Arabinofuranosidase/β-Xylosidase From Caldicellulosiruptor saccharolyticus DSM8903.

Authors:  Md Abu Saleh; Shafi Mahmud; Sarah Albogami; Ahmed M El-Shehawi; Gobindo Kumar Paul; Shirmin Islam; Amit Kumar Dutta; Md Salah Uddin; Shahriar Zaman
Journal:  Front Bioeng Biotechnol       Date:  2022-02-11

10.  Computational Design of a Multi-Epitope Vaccine Against Porphyromonas gingivalis.

Authors:  Bilal Shaker; Sajjad Ahmad; Junhao Shen; Hyung Wook Kim; Dokyun Na
Journal:  Front Immunol       Date:  2022-02-18       Impact factor: 7.561

  10 in total

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