Literature DB >> 28069884

Purification of Zika virus RNA-dependent RNA polymerase and its use to identify small-molecule Zika inhibitors.

Hong-Tao Xu1, Said A Hassounah1, Susan P Colby-Germinario1, Maureen Oliveira1, Clare Fogarty1, Yudong Quan1, Yingshan Han1, Olga Golubkov1, Ilinca Ibanescu1, Bluma Brenner1, Brent R Stranix2, Mark A Wainberg1,3,4.   

Abstract

Background: The viral RNA-dependent RNA polymerase (RdRp) enzymes of the Flaviviridae family are essential for viral replication and are logically important targets for development of antiviral therapeutic agents. Zika virus (ZIKV) is a rapidly re-emerging human pathogen for which no vaccine or antiviral agent is currently available.
Methods: To facilitate development of ZIKV RdRp inhibitors, we have established an RdRp assay using purified recombinant ZIKV NS5 polymerase.
Results: We have shown that both the hepatitis C virus (HCV) nucleoside inhibitor sofosbuvir triphosphate and a pyridoxine-derived non-nucleoside small-molecule inhibitor, DMB213, can act against ZIKV RdRp activity at IC 50 s of 7.3 and 5.2 μM, respectively, in RNA synthesis reactions catalysed by recombinant ZIKV NS5 polymerase. Cell-based assays confirmed the anti-ZIKV activity of sofosbuvir and DMB213 with 50% effective concentrations (EC 50 s) of 8.3 and 4.6 μM, respectively. Control studies showed that DMB213 did not inhibit recombinant HIV-1 reverse transcriptase and showed only very weak inhibition of HIV-1 integrase strand-transfer activity. The S604T substitution in motif B of the ZIKV RdRp, which corresponds to the S282T substitution in motif B of HCV RdRp, which confers resistance to nucleotide inhibitors, also conferred resistance to sofosbuvir triphosphate, but not to DMB213. Enzyme assays showed that DMB213 appears to be competitive with natural nucleoside triphosphate (NTP) substrates. Conclusions: Recombinant ZIKV RdRp assays can be useful tools for the screening of both nucleos(t)ide compounds and non-nucleotide metal ion-chelating agents that interfere with ZIKV replication.
© The Author 2016. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2017        PMID: 28069884      PMCID: PMC5890664          DOI: 10.1093/jac/dkw514

Source DB:  PubMed          Journal:  J Antimicrob Chemother        ISSN: 0305-7453            Impact factor:   5.790


  61 in total

1.  Zika virus. I. Isolations and serological specificity.

Authors:  G W A DICK; S F KITCHEN; A J HADDOW
Journal:  Trans R Soc Trop Med Hyg       Date:  1952-09       Impact factor: 2.184

2.  Guillain-Barré syndrome associated with Zika virus infection.

Authors:  Patrícia Brasil; Patricia Carvalho Sequeira; Andrea D'Avila Freitas; Heruza Einsfeld Zogbi; Guilherme Amaral Calvet; Rogerio Valls de Souza; André Machado Siqueira; Marcos Cesar Lima de Mendonca; Rita Maria Ribeiro Nogueira; Ana Maria Bispo de Filippis; Tom Solomon
Journal:  Lancet       Date:  2016-04-02       Impact factor: 79.321

3.  Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses.

Authors:  G Kuno; G-J J Chang
Journal:  Arch Virol       Date:  2007-01-03       Impact factor: 2.574

4.  General catalytic deficiency of hepatitis C virus RNA polymerase with an S282T mutation and mutually exclusive resistance towards 2'-modified nucleotide analogues.

Authors:  Hélène Dutartre; Cécile Bussetta; Joëlle Boretto; Bruno Canard
Journal:  Antimicrob Agents Chemother       Date:  2006-09-25       Impact factor: 5.191

5.  Identification of a Pyridoxine-Derived Small-Molecule Inhibitor Targeting Dengue Virus RNA-Dependent RNA Polymerase.

Authors:  Hong-Tao Xu; Susan P Colby-Germinario; Said Hassounah; Peter K Quashie; Yingshan Han; Maureen Oliveira; Brent R Stranix; Mark A Wainberg
Journal:  Antimicrob Agents Chemother       Date:  2015-11-16       Impact factor: 5.191

6.  Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5.

Authors:  Hélène Malet; Marie-Pierre Egloff; Barbara Selisko; Rebecca E Butcher; Peter J Wright; Michael Roberts; Arnaud Gruez; Gerlind Sulzenbacher; Clemens Vonrhein; Gérard Bricogne; Jason M Mackenzie; Alexander A Khromykh; Andrew D Davidson; Bruno Canard
Journal:  J Biol Chem       Date:  2007-02-07       Impact factor: 5.157

Review 7.  Direct-acting antiviral agents for hepatitis C: structural and mechanistic insights.

Authors:  Matthias Götte; Jordan J Feld
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2016-05-05       Impact factor: 46.802

8.  I-TASSER server for protein 3D structure prediction.

Authors:  Yang Zhang
Journal:  BMC Bioinformatics       Date:  2008-01-23       Impact factor: 3.169

9.  Nucleotide composition of the Zika virus RNA genome and its codon usage.

Authors:  Formijn van Hemert; Ben Berkhout
Journal:  Virol J       Date:  2016-06-08       Impact factor: 4.099

10.  Characterization of a Novel Murine Model to Study Zika Virus.

Authors:  Shannan L Rossi; Robert B Tesh; Sasha R Azar; Antonio E Muruato; Kathryn A Hanley; Albert J Auguste; Rose M Langsjoen; Slobodan Paessler; Nikos Vasilakis; Scott C Weaver
Journal:  Am J Trop Med Hyg       Date:  2016-03-28       Impact factor: 2.345

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  27 in total

1.  Escape of Tick-Borne Flavivirus from 2'-C-Methylated Nucleoside Antivirals Is Mediated by a Single Conservative Mutation in NS5 That Has a Dramatic Effect on Viral Fitness.

Authors:  Ludek Eyer; Hirofumi Kondo; Darina Zouharova; Minato Hirano; James J Valdés; Memi Muto; Tomas Kastl; Shintaro Kobayashi; Jan Haviernik; Manabu Igarashi; Hiroaki Kariwa; Marketa Vaculovicova; Jiri Cerny; Rene Kizek; Andrea Kröger; Stefan Lienenklaus; Milan Dejmek; Radim Nencka; Martin Palus; Jiri Salat; Erik De Clercq; Kentaro Yoshii; Daniel Ruzek
Journal:  J Virol       Date:  2017-10-13       Impact factor: 5.103

2.  An E460D Substitution in the NS5 Protein of Tick-Borne Encephalitis Virus Confers Resistance to the Inhibitor Galidesivir (BCX4430) and Also Attenuates the Virus for Mice.

Authors:  Ludek Eyer; Antoine Nougairède; Marie Uhlířová; Jean-Sélim Driouich; Darina Zouharová; James J Valdés; Jan Haviernik; Ernest A Gould; Erik De Clercq; Xavier de Lamballerie; Daniel Ruzek
Journal:  J Virol       Date:  2019-07-30       Impact factor: 5.103

3.  High-Throughput Screening Identifies Mixed-Lineage Kinase 3 as a Key Host Regulatory Factor in Zika Virus Infection.

Authors:  Hua Xu; Min Cheng; Xiaojing Chi; Xiuying Liu; Jia Zhou; Tianli Lin; Wei Yang
Journal:  J Virol       Date:  2019-08-28       Impact factor: 5.103

Review 4.  A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika.

Authors:  Shobana Sundar; Shanmughavel Piramanayagam; Jeyakumar Natarajan
Journal:  Virus Genes       Date:  2022-04-08       Impact factor: 2.332

5.  Chalcones from Angelica keiskei (ashitaba) inhibit key Zika virus replication proteins.

Authors:  Melina Mottin; Lindsay K Caesar; David Brodsky; Nathalya C M R Mesquita; Ketllyn Zagato de Oliveira; Gabriela Dias Noske; Bruna K P Sousa; Paulo R P S Ramos; Hannah Jarmer; Bonnie Loh; Kimberley M Zorn; Daniel H Foil; Pedro M Torres; Rafael V C Guido; Glaucius Oliva; Frank Scholle; Sean Ekins; Nadja B Cech; Carolina H Andrade; Scott M Laster
Journal:  Bioorg Chem       Date:  2022-01-31       Impact factor: 5.307

Review 6.  Recent advances in the discovery of potent RNA-dependent RNA-polymerase (RdRp) inhibitors targeting viruses.

Authors:  Rahul Kumar; Sahil Mishra; Sushil K Maurya
Journal:  RSC Med Chem       Date:  2020-12-23

7.  Evaluation of Sofosbuvir (β-D-2'-deoxy-2'-α-fluoro-2'-β-C-methyluridine) as an inhibitor of Dengue virus replication<sup/>.

Authors:  Hong-Tao Xu; Susan P Colby-Germinario; Said A Hassounah; Clare Fogarty; Nathan Osman; Navaneethan Palanisamy; Yingshan Han; Maureen Oliveira; Yudong Quan; Mark A Wainberg
Journal:  Sci Rep       Date:  2017-07-24       Impact factor: 4.379

Review 8.  Nucleoside analogs as a rich source of antiviral agents active against arthropod-borne flaviviruses.

Authors:  Luděk Eyer; Radim Nencka; Erik de Clercq; Katherine Seley-Radtke; Daniel Růžek
Journal:  Antivir Chem Chemother       Date:  2018 Jan-Dec

Review 9.  Dengue Virus Non-Structural Protein 5.

Authors:  Abbas El Sahili; Julien Lescar
Journal:  Viruses       Date:  2017-04-24       Impact factor: 5.048

Review 10.  Zika Virus: What Have We Learnt Since the Start of the Recent Epidemic?

Authors:  Juan-Carlos Saiz; Miguel A Martín-Acebes; Rubén Bueno-Marí; Oscar D Salomón; Luis C Villamil-Jiménez; Jorg Heukelbach; Carlos H Alencar; Paul K Armstrong; Tania M Ortiga-Carvalho; Rosalia Mendez-Otero; Paulo H Rosado-de-Castro; Pedro M Pimentel-Coelho
Journal:  Front Microbiol       Date:  2017-08-22       Impact factor: 5.640

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