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Literature DB >> 12399510

Protein splicing of the Deinococcus radiodurans strain R1 Snf2 intein.

Maurice W Southworth¹, Francine B Perler.

Abstract

Adjacent intein fragments fused to a Snf2/Rad54 helicase-related protein and Snf2/Rad54 helicase were reported for Deinococcus radiodurans R1, leading to the speculation that a frameshift was required for splicing or that trans splicing occurred. However, a type strain (ATCC 13939, RF18410) yielded a single protein that splices by the Ala1 protein splicing pathway, with splicing dependent on adjacent residues.

Entities: Gene Species

Mesh：

Substances：

Year: 2002 PMID： 12399510 PMCID： PMC151952 DOI： 10.1128/JB.184.22.6387-6388.2002

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

8 in total

1. Dissecting the Chemistry of Protein Splicing and Its Applications.

Authors:
Journal: Angew Chem Int Ed Engl Date: 2000-02 Impact factor: 15.336

2. InBase: the Intein Database.

Authors: Francine B Perler
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

3. An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile.

Authors: M W Southworth; J Benner; F B Perler
Journal: EMBO J Date: 2000-09-15 Impact factor: 11.598

4. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (supplement).

Authors: Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal: DNA Res Date: 1998-04-30 Impact factor: 4.458

Review 5. Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics.

Authors: K S Makarova; L Aravind; Y I Wolf; R L Tatusov; K W Minton; E V Koonin; M J Daly
Journal: Microbiol Mol Biol Rev Date: 2001-03 Impact factor: 11.056

6. The Mycobacterium avium-intracellulare complex dnaB locus and protein intein splicing.

Authors: K Yamamoto; B Low; S A Rutherford; M Rajagopalan; M V Madiraju
Journal: Biochem Biophys Res Commun Date: 2001-01-26 Impact factor: 3.575

7. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

Authors: O White; J A Eisen; J F Heidelberg; E K Hickey; J D Peterson; R J Dodson; D H Haft; M L Gwinn; W C Nelson; D L Richardson; K S Moffat; H Qin; L Jiang; W Pamphile; M Crosby; M Shen; J J Vamathevan; P Lam; L McDonald; T Utterback; C Zalewski; K S Makarova; L Aravind; M J Daly; K W Minton; R D Fleischmann; K A Ketchum; K E Nelson; S Salzberg; H O Smith; J C Venter; C M Fraser
Journal: Science Date: 1999-11-19 Impact factor: 47.728

8. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.

Authors: A E Gorbalenya; E V Koonin; A P Donchenko; V M Blinov
Journal: Nucleic Acids Res Date: 1989-06-26 Impact factor: 16.971

8 in total

5 in total

1. The Deinococcus radiodurans Snf2 intein caught in the act: detection of the Class 3 intein signature Block F branched intermediate.

Authors: Lear E Brace; Maurice W Southworth; Kazuo Tori; Michelle L Cushing; Francine Perler
Journal: Protein Sci Date: 2010-08 Impact factor: 6.725

5. Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans.

Authors: S Mennecier; G Coste; P Servant; A Bailone; S Sommer
Journal: Mol Genet Genomics Date: 2004-10-22 Impact factor: 3.291