Literature DB >> 12391320

An approach to membrane protein structure without crystals.

Paul L Sorgen1, Yonglin Hu, Lan Guan, H Ronald Kaback, Mark E Girvin.   

Abstract

The lactose permease of Escherichia coli catalyzes coupled translocation of galactosides and H(+) across the cell membrane. It is the best-characterized member of the Major Facilitator Superfamily, a related group of membrane proteins with 12 transmembrane domains that mediate transport of various substrates across cell membranes. Despite decades of effort and their functional importance in all kingdoms of life, no high-resolution structures have been solved for any member of this family. However, extensive biochemical, genetic, and biophysical studies on lactose permease have established its transmembrane topology, secondary structure, and numerous interhelical contacts. Here we demonstrate that this information is sufficient to calculate a structural model at the level of helix packing or better.

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Year:  2002        PMID: 12391320      PMCID: PMC137832          DOI: 10.1073/pnas.182552199

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Functional estimation of loop-helix boundaries in the lactose permease of Escherichia coli by single amino acid deletion analysis.

Authors:  C D Wolin; H R Kaback
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

2.  Thiol cross-linking of cytoplasmic loops in the lactose permease of Escherichia coli.

Authors:  I Kwaw; J Sun; H R Kaback
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

3.  Projection structure and molecular architecture of OxlT, a bacterial membrane transporter.

Authors:  J A Heymann; R Sarker; T Hirai; D Shi; J L Milne; P C Maloney; S Subramaniam
Journal:  EMBO J       Date:  2001-08-15       Impact factor: 11.598

Review 4.  The kamikaze approach to membrane transport.

Authors:  H R Kaback; M Sahin-Tóth; A B Weinglass
Journal:  Nat Rev Mol Cell Biol       Date:  2001-08       Impact factor: 94.444

5.  Helix packing in the lactose permease of Escherichia coli: localization of helix VI.

Authors:  L Guan; A B Weinglass; H R Kaback
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

6.  Site-directed sulfhydryl labeling of the lactose permease of Escherichia coli: helix VII.

Authors:  P Venkatesan; I Kwaw; Y Hu; H R Kaback
Journal:  Biochemistry       Date:  2000-09-05       Impact factor: 3.162

7.  The C-4 hydroxyl group of galactopyranosides is the major determinant for ligand recognition by the lactose permease of Escherichia coli.

Authors:  M Sahin-Tóth; M C Lawrence; T Nishio; H R Kaback
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

8.  Site-directed sulfhydryl labeling of the lactose permease of Escherichia coli: helices IV and V that contain the major determinants for substrate binding.

Authors:  I Kwaw; K C Zen; Y Hu; H R Kaback
Journal:  Biochemistry       Date:  2001-09-04       Impact factor: 3.162

9.  Site-directed sulfhydryl labeling of the lactose permease of Escherichia coli: helix X.

Authors:  P Venkatesan; Y Hu; H R Kaback
Journal:  Biochemistry       Date:  2000-09-05       Impact factor: 3.162

10.  Helices VII and X in the lactose permease of Escherichia coli: proximity and ligand-induced distance changes.

Authors:  Wei Zhang; Lan Guan; H Ronald Kaback
Journal:  J Mol Biol       Date:  2002-01-04       Impact factor: 5.469

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  26 in total

1.  Intermolecular thiol cross-linking via loops in the lactose permease of Escherichia coli.

Authors:  Natalia Ermolova; Lan Guan; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-21       Impact factor: 11.205

2.  An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.

Authors:  Sarel J Fleishman; Susan Harrington; Richard A Friesner; Barry Honig; Nir Ben-Tal
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

3.  Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.

Authors:  Xiaoduan Ye; Patrick K O'Neil; Adrienne N Foster; Michal J Gajda; Jan Kosinski; Michal A Kurowski; Janusz M Bujnicki; Alan M Friedman; Chris Bailey-Kellogg
Journal:  Protein Sci       Date:  2004-12       Impact factor: 6.725

4.  Multipass membrane protein structure prediction using Rosetta.

Authors:  Vladimir Yarov-Yarovoy; Jack Schonbrun; David Baker
Journal:  Proteins       Date:  2006-03-01

5.  Site-directed alkylation and the alternating access model for LacY.

Authors:  H Ronald Kaback; R Dunten; S Frillingos; P Venkatesan; I Kwaw; W Zhang; Natalia Ermolova
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

Review 6.  Lessons from lactose permease.

Authors:  Lan Guan; H Ronald Kaback
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

7.  Sugar binding and protein conformational changes in lactose permease.

Authors:  Ying Yin; Morten Ø Jensen; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2006-09-08       Impact factor: 4.033

Review 8.  Structural and functional analysis of the Na+/H+ exchanger.

Authors:  Emily R Slepkov; Jan K Rainey; Brian D Sykes; Larry Fliegel
Journal:  Biochem J       Date:  2007-02-01       Impact factor: 3.857

9.  Membrane-inserted conformation of transmembrane domain 4 of divalent-metal transporter.

Authors:  Hongyan Li; Fei Li; Hongzhe Sun; Zhong Ming Qian
Journal:  Biochem J       Date:  2003-06-15       Impact factor: 3.857

10.  Amide vibrations are delocalized across the hydrophobic interface of a transmembrane helix dimer.

Authors:  Chong Fang; Alessandro Senes; Lidia Cristian; William F DeGrado; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

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