Literature DB >> 12379649

Role of hydration in the binding of lac repressor to DNA.

Michael G Fried1, Douglas F Stickle, Karen Vossen Smirnakis, Claire Adams, Douglas MacDonald, Ponzy Lu.   

Abstract

The osmotic stress technique was used to measure changes in macromolecular hydration that accompany binding of wild-type Escherichia coli lactose (lac) repressor to its regulatory site (operator O1) in the lac promoter and its transfer from site O1 to nonspecific DNA. Binding at O1 is accompanied by the net release of 260 +/- 32 water molecules. If all are released from macromolecular surfaces, this result is consistent with a net reduction of solvent-accessible surface area of 2370 +/- 550 A. This area is only slightly smaller than the macromolecular interface calculated for a crystalline repressor dimer-O1 complex but is significantly smaller than that for the corresponding complex with the symmetrical optimized O(sym) operator. The transfer of repressor from site O1 to nonspecific DNA is accompanied by the net uptake of 93 +/- 10 water molecules. Together these results imply that formation of a nonspecific complex is accompanied by the net release of 165 +/- 43 water molecules. The enhanced stabilities of repressor-DNA complexes with increasing osmolality may contribute to the ability of Escherichia coli cells to tolerate dehydration and/or high external salt concentrations.

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Year:  2002        PMID: 12379649     DOI: 10.1074/jbc.M208540200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  16 in total

1.  Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

Authors:  Nina Y Sidorova; Donald C Rau
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

Review 2.  Understanding protein non-folding.

Authors:  Vladimir N Uversky; A Keith Dunker
Journal:  Biochim Biophys Acta       Date:  2010-02-01

3.  Stepwise bending of DNA by a single TATA-box binding protein.

Authors:  Simon F Tolić-Nørrelykke; Mette B Rasmussen; Francesco S Pavone; Kirstine Berg-Sørensen; Lene B Oddershede
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

4.  Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions.

Authors:  Lance M Hellman; Michael G Fried
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding.

Authors:  Jiang Hong; Mike W Capp; Ruth M Saecker; M Thomas Record
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

Review 6.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

7.  Computational investigation on microsolvation of the osmolyte glycine betaine [GB (H(2)O)(1-7)].

Authors:  Srinivasadesikan Venkatesan; Shyi-Long Lee
Journal:  J Mol Model       Date:  2012-06-27       Impact factor: 1.810

8.  Effect of osmolytes on the binding of EGR1 transcription factor to DNA.

Authors:  David C Mikles; Vikas Bhat; Brett J Schuchardt; Caleb B McDonald; Amjad Farooq
Journal:  Biopolymers       Date:  2015-02       Impact factor: 2.505

9.  Using single-turnover kinetics with osmotic stress to characterize the EcoRV cleavage reaction.

Authors:  Rocco Ferrandino; Nina Sidorova; Donald Rau
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

10.  Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.

Authors:  Michael W Capp; Laurel M Pegram; Ruth M Saecker; Megan Kratz; Demian Riccardi; Timothy Wendorff; Jonathan G Cannon; M Thomas Record
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

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