Literature DB >> 12374855

Studies of the aggregation of mutant proteins in vitro provide insights into the genetics of amyloid diseases.

Fabrizio Chiti1, Martino Calamai, Niccolo Taddei, Massimo Stefani, Giampietro Ramponi, Christopher M Dobson.   

Abstract

Protein aggregation and the formation of highly insoluble amyloid structures is associated with a range of debilitating human conditions, which include Alzheimer's disease, Parkinson's disease, and the Creutzfeldt-Jakob disease. Muscle acylphosphatase (AcP) has already provided significant insights into mutational changes that modulate amyloid formation. In the present paper, we have used this system to investigate the effects of mutations that modify the charge state of a protein without affecting significantly the hydrophobicity or secondary structural propensities of the polypeptide chain. A highly significant inverse correlation was found to exist between the rates of aggregation of the protein variants under denaturing conditions and their overall net charge. This result indicates that aggregation is generally favored by mutations that bring the net charge of the protein closer to neutrality. In light of this finding, we have analyzed natural mutations associated with familial forms of amyloid diseases that involve alteration of the net charge of the proteins or protein fragments associated with the diseases. Sixteen mutations have been identified for which the mechanism of action that causes the pathological condition is not yet known or fully understood. Remarkably, 14 of these 16 mutations cause the net charge of the corresponding peptide or protein that converts into amyloid deposits to be reduced. This result suggests that charge has been a key parameter in molecular evolution to ensure the avoidance of protein aggregation and identifies reduction of the net charge as an important determinant in at least some forms of protein deposition diseases.

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Year:  2002        PMID: 12374855      PMCID: PMC139903          DOI: 10.1073/pnas.212527999

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  77 in total

1.  Naturally secreted oligomers of amyloid beta protein potently inhibit hippocampal long-term potentiation in vivo.

Authors:  Dominic M Walsh; Igor Klyubin; Julia V Fadeeva; William K Cullen; Roger Anwyl; Michael S Wolfe; Michael J Rowan; Dennis J Selkoe
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

2.  The fibril_one on-line database: mutations, experimental conditions, and trends associated with amyloid fibril formation.

Authors:  Jennifer A Siepen; David R Westhead
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

3.  A mutation in apolipoprotein A-I in the Iowa type of familial amyloidotic polyneuropathy.

Authors:  W C Nichols; R E Gregg; H B Brewer; M D Benson
Journal:  Genomics       Date:  1990-10       Impact factor: 5.736

4.  Protein engineering in analysis of protein folding pathways and stability.

Authors:  A Matouschek; A R Fersht
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

5.  Acid-induced folding of proteins.

Authors:  Y Goto; L J Calciano; A L Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

6.  Mutation of the Alzheimer's disease amyloid gene in hereditary cerebral hemorrhage, Dutch type.

Authors:  E Levy; M D Carman; I J Fernandez-Madrid; M D Power; I Lieberburg; S G van Duinen; G T Bots; W Luyendijk; B Frangione
Journal:  Science       Date:  1990-06-01       Impact factor: 47.728

7.  Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants.

Authors:  M M Santoro; D W Bolen
Journal:  Biochemistry       Date:  1988-10-18       Impact factor: 3.162

8.  Vesicle permeabilization by protofibrillar alpha-synuclein is sensitive to Parkinson's disease-linked mutations and occurs by a pore-like mechanism.

Authors:  Michael J Volles; Peter T Lansbury
Journal:  Biochemistry       Date:  2002-04-09       Impact factor: 3.162

9.  Isolation of a fragment of tau derived from the core of the paired helical filament of Alzheimer disease.

Authors:  C M Wischik; M Novak; H C Thøgersen; P C Edwards; M J Runswick; R Jakes; J E Walker; C Milstein; M Roth; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

10.  Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases.

Authors:  Monica Bucciantini; Elisa Giannoni; Fabrizio Chiti; Fabiana Baroni; Lucia Formigli; Jesús Zurdo; Niccolò Taddei; Giampietro Ramponi; Christopher M Dobson; Massimo Stefani
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

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  69 in total

1.  De novo designed peptide-based amyloid fibrils.

Authors:  Manuela López De La Paz; Kenneth Goldie; Jesús Zurdo; Emmanuel Lacroix; Christopher M Dobson; Andreas Hoenger; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-27       Impact factor: 11.205

2.  Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.

Authors:  Salvador Ventura; Jesús Zurdo; Saravanakumar Narayanan; Matilde Parreño; Ramón Mangues; Bernd Reif; Fabrizio Chiti; Elisa Giannoni; Christopher M Dobson; Francesc X Aviles; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

3.  The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates.

Authors:  Gian Gaetano Tartaglia; Andrea Cavalli; Riccardo Pellarin; Amedeo Caflisch
Journal:  Protein Sci       Date:  2004-05-28       Impact factor: 6.725

4.  Resolution of the effects induced by W → F substitutions on the conformation and dynamics of the amyloid-forming apomyoglobin mutant W7FW14F.

Authors:  Giuseppe Infusini; Clara Iannuzzi; Silvia Vilasi; Leila Birolo; Daniela Pagnozzi; Piero Pucci; Gaetano Irace; Ivana Sirangelo
Journal:  Eur Biophys J       Date:  2012-06-22       Impact factor: 1.733

5.  Charge effects on the fibril-forming peptide KTVIIE: a two-dimensional replica exchange simulation study.

Authors:  Joohyun Jeon; M Scott Shell
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

6.  Lack of Dependence of the Sizes of the Mesoscopic Protein Clusters on Electrostatics.

Authors:  Maria A Vorontsova; Ho Yin Chan; Vassiliy Lubchenko; Peter G Vekilov
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

7.  Ligand binding analysis and screening by chemical denaturation shift.

Authors:  Arne Schön; Richard K Brown; Burleigh M Hutchins; Ernesto Freire
Journal:  Anal Biochem       Date:  2013-08-29       Impact factor: 3.365

8.  Organism complexity anti-correlates with proteomic beta-aggregation propensity.

Authors:  Gian Gaetano Tartaglia; Riccardo Pellarin; Andrea Cavalli; Amedeo Caflisch
Journal:  Protein Sci       Date:  2005-09-09       Impact factor: 6.725

9.  Amyloid formation of a protein in the absence of initial unfolding and destabilization of the native state.

Authors:  Gemma Soldi; Francesco Bemporad; Silvia Torrassa; Annalisa Relini; Matteo Ramazzotti; Niccolò Taddei; Fabrizio Chiti
Journal:  Biophys J       Date:  2005-09-16       Impact factor: 4.033

10.  Lysine acetylation can generate highly charged enzymes with increased resistance toward irreversible inactivation.

Authors:  Bryan F Shaw; Gregory F Schneider; Basar Bilgiçer; George K Kaufman; John M Neveu; William S Lane; Julian P Whitelegge; George M Whitesides
Journal:  Protein Sci       Date:  2008-05-01       Impact factor: 6.725

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