Literature DB >> 12370427

The origin of a developmentally regulated Igh replicon is located near the border of regulatory domains for Igh replication and expression.

Jie Zhou1, Nasrin Ashouian, Marc Delepine, Fumihiko Matsuda, Christophe Chevillard, Roy Riblet, Carl L Schildkraut, Barbara K Birshtein.   

Abstract

The 3' Ig heavy chain locus (Igh) regulatory region is the most downstream known element of the murine Igh gene cluster. We report here that the nearest non-Igh genes-Crip, Crp2, and Mta1-are located approximately 70 kb further downstream and are beyond the end of the domain of Igh transcriptional regulation. We have localized an origin of replication in MEL cells to a 3-kb segment located between the 3' Igh regulatory region and Crip. Sequences downstream of this origin are replicated by forks that move in both directions. Sequences upstream of this origin (Igh-C, -D, and -J) are replicated in a single direction through a 500-kb segment in which no active bidirectional origins can be detected. We propose that this origin may lie at or near the end of the Igh regulation domain.

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Year:  2002        PMID: 12370427      PMCID: PMC129745          DOI: 10.1073/pnas.212392399

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  PipMaker--a web server for aligning two genomic DNA sequences.

Authors:  S Schwartz; Z Zhang; K A Frazer; A Smit; C Riemer; J Bouck; R Gibbs; R Hardison; W Miller
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

2.  DNA double-strand breaks in immunoglobulin genes undergoing somatic hypermutation.

Authors:  L Bross; Y Fukita; F McBlane; C Démollière; K Rajewsky; H Jacobs
Journal:  Immunity       Date:  2000-11       Impact factor: 31.745

3.  Cell-cycle-regulated DNA double-stranded breaks in somatic hypermutation of immunoglobulin genes.

Authors:  F N Papavasiliou; D G Schatz
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

4.  Chromatin remodeling at the Ig loci prior to V(D)J recombination.

Authors:  J Maës; L P O'Neill; P Cavelier; B M Turner; F Rougeon; M Goodhardt
Journal:  J Immunol       Date:  2001-07-15       Impact factor: 5.422

5.  A pivotal role for DNase I-sensitive regions 3b and/or 4 in the induction of somatic hypermutation of IgH genes.

Authors:  A Terauchi; K Hayashi; D Kitamura; Y Kozono; N Motoyama; T Azuma
Journal:  J Immunol       Date:  2001-07-15       Impact factor: 5.422

6.  Nonequivalent nuclear location of immunoglobulin alleles in B lymphocytes.

Authors:  J A Skok; K E Brown; V Azuara; M L Caparros; J Baxter; K Takacs; N Dillon; D Gray; R P Perry; M Merkenschlager; A G Fisher
Journal:  Nat Immunol       Date:  2001-09       Impact factor: 25.606

7.  Localization of the 3' IgH locus elements that effect long-distance regulation of class switch recombination.

Authors:  E Pinaud; A A Khamlichi; C Le Morvan; M Drouet; V Nalesso; M Le Bert; M Cogné
Journal:  Immunity       Date:  2001-08       Impact factor: 31.745

8.  Differential expression and subcellular distribution of the mouse metastasis-associated proteins Mta1 and Mta3.

Authors:  A Simpson; J Uitto; U Rodeck; M G Mahoney
Journal:  Gene       Date:  2001-07-25       Impact factor: 3.688

9.  Transcriptional repression of oestrogen receptor by metastasis-associated protein 1 corepressor.

Authors:  A Mazumdar; R A Wang; S K Mishra; L Adam; R Bagheri-Yarmand; M Mandal; R K Vadlamudi; R Kumar
Journal:  Nat Cell Biol       Date:  2001-01       Impact factor: 28.824

Review 10.  Regulation of cysteine-rich intestinal protein, a zinc finger protein, by mediators of the immune response.

Authors:  R J Cousins; L Lanningham-Foster
Journal:  J Infect Dis       Date:  2000-09       Impact factor: 5.226

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  22 in total

Review 1.  The pathogenetic role of oncogenes deregulated by chromosomal translocation in B-cell malignancies.

Authors:  Martin J S Dyer
Journal:  Int J Hematol       Date:  2003-05       Impact factor: 2.490

Review 2.  In search of the holy replicator.

Authors:  David M Gilbert
Journal:  Nat Rev Mol Cell Biol       Date:  2004-10       Impact factor: 94.444

3.  Changes in replication, nuclear location, and expression of the Igh locus after fusion of a pre-B cell line with a T cell line.

Authors:  Jie Zhou; Shireen Saleque; Olga Ermakova; Manuel A Sepulveda; Qiaoxin Yang; Laurel A Eckhardt; Carl L Schildkraut; Barbara K Birshtein
Journal:  J Immunol       Date:  2005-08-15       Impact factor: 5.422

4.  Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome.

Authors:  Michaela Schwaiger; Michael B Stadler; Oliver Bell; Hubertus Kohler; Edward J Oakeley; Dirk Schübeler
Journal:  Genes Dev       Date:  2009-03-01       Impact factor: 11.361

5.  Genome-wide depletion of replication initiation events in highly transcribed regions.

Authors:  Melvenia M Martin; Michael Ryan; RyangGuk Kim; Anna L Zakas; Haiqing Fu; Chii Mei Lin; William C Reinhold; Sean R Davis; Sven Bilke; Hongfang Liu; James H Doroshow; Mark A Reimers; Manuel S Valenzuela; Yves Pommier; Paul S Meltzer; Mirit I Aladjem
Journal:  Genome Res       Date:  2011-08-03       Impact factor: 9.043

6.  Germline deletion of Igh 3' regulatory region elements hs 5, 6, 7 (hs5-7) affects B cell-specific regulation, rearrangement, and insulation of the Igh locus.

Authors:  Sabrina A Volpi; Jiyoti Verma-Gaur; Rabih Hassan; Zhongliang Ju; Sergio Roa; Sanjukta Chatterjee; Uwe Werling; Harry Hou; Britta Will; Ulrich Steidl; Matthew Scharff; Winfried Edelman; Ann J Feeney; Barbara K Birshtein
Journal:  J Immunol       Date:  2012-02-17       Impact factor: 5.422

7.  S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase.

Authors:  Robert Wuerffel; Lili Wang; Fernando Grigera; John Manis; Erik Selsing; Thomas Perlot; Frederick W Alt; Michel Cogne; Eric Pinaud; Amy L Kenter
Journal:  Immunity       Date:  2007-11-01       Impact factor: 31.745

8.  ATM deficiency augments constitutively nuclear cyclin D1-driven genomic instability and lymphomagenesis.

Authors:  L P Vaites; Z Lian; E K Lee; B Yin; A DeMicco; C H Bassing; J A Diehl
Journal:  Oncogene       Date:  2013-01-14       Impact factor: 9.867

Review 9.  The replicon revisited: an old model learns new tricks in metazoan chromosomes.

Authors:  Mirit I Aladjem; Ellen Fanning
Journal:  EMBO Rep       Date:  2004-07       Impact factor: 8.807

10.  Decreased replication origin activity in temporal transition regions.

Authors:  Zeqiang Guan; Christina M Hughes; Settapong Kosiyatrakul; Paolo Norio; Ranjan Sen; Steven Fiering; C David Allis; Eric E Bouhassira; Carl L Schildkraut
Journal:  J Cell Biol       Date:  2009-11-30       Impact factor: 10.539

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