Literature DB >> 12350221

Far-red fluorescent tag for protein labelling.

Arkady F Fradkov1, Vladislav V Verkhusha, Dmitry B Staroverov, Maria E Bulina, Yurii G Yanushevich, Vladimir I Martynov, Sergey Lukyanov, Konstantin A Lukyanov.   

Abstract

Practical applications of green fluorescent protein ('GFP')-like fluorescent proteins (FPs) from species of the class Anthozoa (sea anemones, corals and sea pens) are strongly restricted owing to their oligomeric nature. Here we suggest a strategy to overcome this problem by the use of two covalently linked identical red FPs as non-oligomerizing fusion tags. We have applied this approach to the dimeric far-red fluorescent protein HcRed1 and have demonstrated superiority of the tandem tag in the in vivo labelling of fine cytoskeletal structures and tiny nucleoli. In addition, a possibility of effective fluorescence resonance energy transfer ('FRET') between enhanced yellow FP mutant ('EYFP') and tandem HcRed1 was demonstrated in a protease assay.

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Year:  2002        PMID: 12350221      PMCID: PMC1222991          DOI: 10.1042/BJ20021191

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  19 in total

1.  Denaturation and partial renaturation of a tightly tetramerized DsRed protein under mildly acidic conditions.

Authors:  P V Vrzheshch; N A Akovbian; S D Varfolomeyev; V V Verkhusha
Journal:  FEBS Lett       Date:  2000-12-29       Impact factor: 4.124

2.  Red fluorescent protein from Discosoma as a fusion tag and a partner for fluorescence resonance energy transfer.

Authors:  H Mizuno; A Sawano; P Eli; H Hama; A Miyawaki
Journal:  Biochemistry       Date:  2001-02-27       Impact factor: 3.162

3.  Fluorescent proteins from nonbioluminescent Anthozoa species.

Authors:  M V Matz; A F Fradkov; Y A Labas; A P Savitsky; A G Zaraisky; M L Markelov; S A Lukyanov
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

4.  Natural animal coloration can Be determined by a nonfluorescent green fluorescent protein homolog.

Authors:  K A Lukyanov; A F Fradkov; N G Gurskaya; M V Matz; Y A Labas; A P Savitsky; M L Markelov; A G Zaraisky; X Zhao; Y Fang; W Tan; S A Lukyanov
Journal:  J Biol Chem       Date:  2000-08-25       Impact factor: 5.157

Review 5.  Using GFP in FRET-based applications.

Authors:  B A Pollok; R Heim
Journal:  Trends Cell Biol       Date:  1999-02       Impact factor: 20.808

6.  Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral.

Authors:  G S Baird; D A Zacharias; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

7.  Expression of fluorescently tagged connexins: a novel approach to rescue function of oligomeric DsRed-tagged proteins.

Authors:  U Lauf; P Lopez; M M Falk
Journal:  FEBS Lett       Date:  2001-06-01       Impact factor: 4.124

8.  Förster distances between green fluorescent protein pairs.

Authors:  G H Patterson; D W Piston; B G Barisas
Journal:  Anal Biochem       Date:  2000-09-10       Impact factor: 3.365

9.  Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence.

Authors:  A F Fradkov; Y Chen; L Ding; E V Barsova; M V Matz; S A Lukyanov
Journal:  FEBS Lett       Date:  2000-08-18       Impact factor: 4.124

10.  The dynamics of postmitotic reassembly of the nucleolus.

Authors:  M Dundr; T Misteli; M O Olson
Journal:  J Cell Biol       Date:  2000-08-07       Impact factor: 10.539

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  15 in total

1.  Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins.

Authors:  Maria E Bulina; Vladislav V Verkhusha; Dmitry B Staroverov; Dmitry M Chudakov; Konstantin A Lukyanov
Journal:  Biochem J       Date:  2003-04-01       Impact factor: 3.857

2.  Evolution of new nonantibody proteins via iterative somatic hypermutation.

Authors:  Lei Wang; W Coyt Jackson; Paul A Steinbach; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

Review 3.  Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.

Authors:  Olesya V Stepanenko; Vladislav V Verkhusha; Irina M Kuznetsova; Vladimir N Uversky; K K Turoverov
Journal:  Curr Protein Pept Sci       Date:  2008-08       Impact factor: 3.272

Review 4.  From fluorescent proteins to fluorogenic RNAs: Tools for imaging cellular macromolecules.

Authors:  Lynda Truong; Adrian R Ferré-D'Amaré
Journal:  Protein Sci       Date:  2019-05-11       Impact factor: 6.725

5.  Far-red fluorescent tags for protein imaging in living tissues.

Authors:  Dmitry Shcherbo; Christopher S Murphy; Galina V Ermakova; Elena A Solovieva; Tatiana V Chepurnykh; Aleksandr S Shcheglov; Vladislav V Verkhusha; Vladimir Z Pletnev; Kristin L Hazelwood; Patrick M Roche; Sergey Lukyanov; Andrey G Zaraisky; Michael W Davidson; Dmitriy M Chudakov
Journal:  Biochem J       Date:  2009-03-15       Impact factor: 3.857

Review 6.  The fluorescent protein palette: tools for cellular imaging.

Authors:  Richard N Day; Michael W Davidson
Journal:  Chem Soc Rev       Date:  2009-08-04       Impact factor: 54.564

7.  Mechanism of copper induced fluorescence quenching of red fluorescent protein, DsRed.

Authors:  Yasmeen Rahimi; Ann Goulding; Suresh Shrestha; Sweetie Mirpuri; Sapna K Deo
Journal:  Biochem Biophys Res Commun       Date:  2008-03-17       Impact factor: 3.575

8.  In vitro and in vivo high-throughput assays for the testing of anti-Trypanosoma cruzi compounds.

Authors:  Adriana M C Canavaci; Juan M Bustamante; Angel M Padilla; Cecilia M Perez Brandan; Laura J Simpson; Dan Xu; Courtney L Boehlke; Rick L Tarleton
Journal:  PLoS Negl Trop Dis       Date:  2010-07-13

9.  Conversion of red fluorescent protein into a bright blue probe.

Authors:  Oksana M Subach; Illia S Gundorov; Masami Yoshimura; Fedor V Subach; Jinghang Zhang; David Grüenwald; Ekaterina A Souslova; Dmitriy M Chudakov; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2008-10-20

10.  A dark yellow fluorescent protein (YFP)-based Resonance Energy-Accepting Chromoprotein (REACh) for Förster resonance energy transfer with GFP.

Authors:  Sundar Ganesan; Simon M Ameer-Beg; Tony T C Ng; Borivoj Vojnovic; Fred S Wouters
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-06       Impact factor: 11.205

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