Literature DB >> 12241048

Time dependent responses of glycolytic intermediates in a detailed glycolytic model of Lactococcus lactis during glucose run-out experiments.

M H N Hoefnagel1, A van der Burgt, D E Martens, J Hugenholtz, J L Snoep.   

Abstract

Glucose addition and subsequent run-out experiments were compared to simulations with a detailed glycolytic model of Lactococcus lactis. The model was constructed largely on bases of enzyme kinetic data taken from literature and not adjusted for the specific simulations shown here. Upon glucose depletion a rapid increase in PEP, inorganic phosphate and a gradual decrease in fructose 1,6-bisphosphate (FBP) were measured and predicted by simulation. The dynamic changes in these and other intermediate concentrations as measured in the experiments were well predicted by the kinetic model.

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Year:  2002        PMID: 12241048     DOI: 10.1023/a:1020313409954

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  4 in total

1.  Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis.

Authors:  Marcel H N Hoefnagel; Marjo J C Starrenburg; Dirk E Martens; Jeroen Hugenholtz; Michiel Kleerebezem; Iris I Van Swam; Roger Bongers; Hans V Westerhoff; Jacky L Snoep
Journal:  Microbiology (Reading)       Date:  2002-04       Impact factor: 2.777

2.  The metabolic network of Lactococcus lactis: distribution of (14)C-labeled substrates between catabolic and anabolic pathways.

Authors:  L Novák; P Loubiere
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

3.  GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems.

Authors:  P Mendes
Journal:  Comput Appl Biosci       Date:  1993-10

4.  Regulation of product formation during glucose or lactose limitation in nongrowing cells of Streptococcus lactis.

Authors:  A M Fordyce; V L Crow; T D Thomas
Journal:  Appl Environ Microbiol       Date:  1984-08       Impact factor: 4.792

  4 in total
  11 in total

1.  Characterization of three lactic acid bacteria and their isogenic ldh deletion mutants shows optimization for YATP (cell mass produced per mole of ATP) at their physiological pHs.

Authors:  Tomas Fiedler; Martijn Bekker; Maria Jonsson; Ibrahim Mehmeti; Anja Pritzschke; Nikolai Siemens; Ingolf Nes; Jeroen Hugenholtz; Bernd Kreikemeyer
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Flux Control in Glycolysis Varies Across the Tree of Life.

Authors:  Alena Orlenko; Russell A Hermansen; David A Liberles
Journal:  J Mol Evol       Date:  2016-02-26       Impact factor: 2.395

3.  Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions.

Authors:  Anisha Goel; Filipe Santos; Willem M de Vos; Bas Teusink; Douwe Molenaar
Journal:  Appl Environ Microbiol       Date:  2011-10-21       Impact factor: 4.792

4.  Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation.

Authors:  Ettore Murabito; Malkhey Verma; Martijn Bekker; Domenico Bellomo; Hans V Westerhoff; Bas Teusink; Ralf Steuer
Journal:  PLoS One       Date:  2014-09-30       Impact factor: 3.240

5.  Overproduction of heterologous mannitol 1-phosphatase: a key factor for engineering mannitol production by Lactococcus lactis.

Authors:  H Wouter Wisselink; Antoine P H A Moers; Astrid E Mars; Marcel H N Hoefnagel; Willem M de Vos; Jeroen Hugenholtz
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

Review 6.  Systems biology of lactic acid bacteria: a critical review.

Authors:  Bas Teusink; Herwig Bachmann; Douwe Molenaar
Journal:  Microb Cell Fact       Date:  2011-08-30       Impact factor: 5.328

7.  A graphical user interface for a method to infer kinetics and network architecture (MIKANA).

Authors:  Márcio A Mourão; Jeyaraman Srividhya; Patrick E McSharry; Edmund J Crampin; Santiago Schnell
Journal:  PLoS One       Date:  2011-11-11       Impact factor: 3.240

Review 8.  Metabolic engineering of lactic acid bacteria for the production of industrially important compounds.

Authors:  Maria Papagianni
Journal:  Comput Struct Biotechnol J       Date:  2012-10-29       Impact factor: 7.271

9.  TIde: a software for the systematic scanning of drug targets in kinetic network models.

Authors:  Marvin Schulz; Barbara M Bakker; Edda Klipp
Journal:  BMC Bioinformatics       Date:  2009-10-19       Impact factor: 3.169

10.  Tracing regulatory routes in metabolism using generalised supply-demand analysis.

Authors:  Carl D Christensen; Jan-Hendrik S Hofmeyr; Johann M Rohwer
Journal:  BMC Syst Biol       Date:  2015-12-03
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