Literature DB >> 11932446

Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis.

Marcel H N Hoefnagel1, Marjo J C Starrenburg2,1, Dirk E Martens1, Jeroen Hugenholtz2,1, Michiel Kleerebezem2,1, Iris I Van Swam2,1, Roger Bongers2,1, Hans V Westerhoff3, Jacky L Snoep4,3.   

Abstract

Everyone who has ever tried to radically change metabolic fluxes knows that it is often harder to determine which enzymes have to be modified than it is to actually implement these changes. In the more traditional genetic engineering approaches 'bottle-necks' are pinpointed using qualitative, intuitive approaches, but the alleviation of suspected 'rate-limiting' steps has not often been successful. Here the authors demonstrate that a model of pyruvate distribution in Lactococcus lactis based on enzyme kinetics in combination with metabolic control analysis clearly indicates the key control points in the flux to acetoin and diacetyl, important flavour compounds. The model presented here (available at http://jjj.biochem.sun.ac.za/wcfs.html) showed that the enzymes with the greatest effect on this flux resided outside the acetolactate synthase branch itself. Experiments confirmed the predictions of the model, i.e. knocking out lactate dehydrogenase and overexpressing NADH oxidase increased the flux through the acetolactate synthase branch from 0 to 75% of measured product formation rates.

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Year:  2002        PMID: 11932446     DOI: 10.1099/00221287-148-4-1003

Source DB:  PubMed          Journal:  Microbiology (Reading)        ISSN: 1350-0872            Impact factor:   2.777


  40 in total

1.  Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks.

Authors:  Jacek Puchałka; Andrzej M Kierzek
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

2.  Time dependent responses of glycolytic intermediates in a detailed glycolytic model of Lactococcus lactis during glucose run-out experiments.

Authors:  M H N Hoefnagel; A van der Burgt; D E Martens; J Hugenholtz; J L Snoep
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

3.  Characterization of three lactic acid bacteria and their isogenic ldh deletion mutants shows optimization for YATP (cell mass produced per mole of ATP) at their physiological pHs.

Authors:  Tomas Fiedler; Martijn Bekker; Maria Jonsson; Ibrahim Mehmeti; Anja Pritzschke; Nikolai Siemens; Ingolf Nes; Jeroen Hugenholtz; Bernd Kreikemeyer
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

4.  Systems biology towards life in silico: mathematics of the control of living cells.

Authors:  Hans V Westerhoff; Alexey Kolodkin; Riaan Conradie; Stephen J Wilkinson; Frank J Bruggeman; Klaas Krab; Jan H van Schuppen; Hanna Hardin; Barbara M Bakker; Martijn J Moné; Katja N Rybakova; Marco Eijken; Hans J P van Leeuwen; Jacky L Snoep
Journal:  J Math Biol       Date:  2008-02-16       Impact factor: 2.259

5.  Approaches to biosimulation of cellular processes.

Authors:  F J Bruggeman; H V Westerhoff
Journal:  J Biol Phys       Date:  2006-11-11       Impact factor: 1.365

6.  Overproduction of heterologous mannitol 1-phosphatase: a key factor for engineering mannitol production by Lactococcus lactis.

Authors:  H Wouter Wisselink; Antoine P H A Moers; Astrid E Mars; Marcel H N Hoefnagel; Willem M de Vos; Jeroen Hugenholtz
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

7.  Metabolic engineering of mannitol production in Lactococcus lactis: influence of overexpression of mannitol 1-phosphate dehydrogenase in different genetic backgrounds.

Authors:  H Wouter Wisselink; Astrid E Mars; Pieter van der Meer; Gerrit Eggink; Jeroen Hugenholtz
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

8.  IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis.

Authors:  Roger S Bongers; Marcel H N Hoefnagel; Marjo J C Starrenburg; Marco A J Siemerink; John G A Arends; Jeroen Hugenholtz; Michiel Kleerebezem
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

9.  Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution.

Authors:  Hui Cai; Rebecca Thompson; Mateo F Budinich; Jeff R Broadbent; James L Steele
Journal:  Genome Biol Evol       Date:  2009-07-14       Impact factor: 3.416

10.  Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification.

Authors:  Tuty Asmawaty Abdul Kadir; Ahmad A Mannan; Andrzej M Kierzek; Johnjoe McFadden; Kazuyuki Shimizu
Journal:  Microb Cell Fact       Date:  2010-11-19       Impact factor: 5.328

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