Literature DB >> 12226714

A bovine whole-genome radiation hybrid panel and outline map.

John L Williams1, André Eggen, Luca Ferretti, Christine J Farr, Mathieu Gautier, Giuseppe Amati, Glynn Ball, Tiziana Caramorr, Ricky Critcher, Sandro Costa, Patrick Hextall, David Hills, Aurore Jeulin, Susanna L Kiguwa, Olivia Ross, Angela L Smith, Katiana Saunier, Barbara Urquhart, Dave Waddington.   

Abstract

A 3000-rad radiation hybrid panel was constructed for cattle and used to build outline RH maps for all 29 autosomes and the X and Y chromosomes. These outline maps contain about 1200 markers, most of which are anonymous microsatellite loci. Comparisons between the RH chromosome maps, other published RH maps, and linkage maps allow regions of chromosomes that are poorly mapped or that have sparse marker coverage to be identified. In some cases, mapping ambiguities can be resolved. The RH maps presented here are the starting point for mapping additional loci, in particular genes and ESTs that will allow detailed comparative maps between cattle and other species to be constructed. Radiation hybrid cell panels allow high-density genetic maps to be constructed, with the advantage over linkage mapping that markers do not need to be polymorphic. A large quantity of DNA has been prepared from the cells forming the RH panel reported here and is publicly available for mapping large numbers of loci.

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Year:  2002        PMID: 12226714     DOI: 10.1007/s00335-002-3001-x

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  25 in total

1.  Application of AFLP technology to radiation hybrid mapping.

Authors:  C Gorni; J L Williams; H C M Heuven; R Negrini; A Valentini; M J T van Eijk; D Waddington; M Zevenbergen; P Ajmone Marsan; J D Peleman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

2.  Generation of an improved cytogenetic and comparative map of Bos taurus chromosome BTA27.

Authors:  Tom Goldammer; Ronald M Brunner; Rosemarie Weikard; Christa Kuehn; Klaus Wimmers
Journal:  Chromosome Res       Date:  2007-01-09       Impact factor: 5.239

3.  The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes.

Authors:  Bhanu P Chowdhary; Terje Raudsepp; Srinivas R Kata; Glenda Goh; Lee V Millon; Veronica Allan; François Piumi; Gérard Guérin; June Swinburne; Matthew Binns; Teri L Lear; Jim Mickelson; James Murray; Douglas F Antczak; James E Womack; Loren C Skow
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

4.  Effects of DGAT1 gene on meat and carcass fatness quality in Chinese commercial cattle.

Authors:  Zhengrong Yuan; Junya Li; Jiao Li; Xue Gao; Huijiang Gao; Shangzhong Xu
Journal:  Mol Biol Rep       Date:  2012-11-10       Impact factor: 2.316

5.  Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism.

Authors:  Abigail R Freeman; Clive J Hoggart; O Hanotte; Daniel G Bradley
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

6.  A 2cM genome-wide scan of European Holstein cattle affected by classical BSE.

Authors:  Brenda M Murdoch; Michael L Clawson; William W Laegreid; Paul Stothard; Matthew Settles; Stephanie McKay; Aparna Prasad; Zhiquan Wang; Stephen S Moore; John L Williams
Journal:  BMC Genet       Date:  2010-03-29       Impact factor: 2.797

7.  A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates.

Authors:  Annelie Everts-van der Wind; Srinivas R Kata; Mark R Band; Mark Rebeiz; Denis M Larkin; Robin E Everts; Cheryl A Green; Lei Liu; Shreedhar Natarajan; Tom Goldammer; Jun Heon Lee; Stephanie McKay; James E Womack; Harris A Lewin
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

8.  Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6.

Authors:  Hanne Gro Olsen; Sigbjørn Lien; Mathieu Gautier; Heidi Nilsen; Arne Roseth; Paul R Berg; Kristil K Sundsaasen; Morten Svendsen; Theo H E Meuwissen
Journal:  Genetics       Date:  2004-09-30       Impact factor: 4.562

9.  A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly.

Authors:  Elisa Marques; Simon de Givry; Paul Stothard; Brenda Murdoch; Zhiquan Wang; James Womack; Stephen S Moore
Journal:  BMC Genomics       Date:  2007-07-26       Impact factor: 3.969

10.  A comprehensive radiation hybrid map of bovine Chromosome 26 (BTA26): comparative chromosomal organization between HSA10q and BTA26 and BTA28.

Authors:  Mathieu Gautier; Hélène Hayes; André Eggen
Journal:  Mamm Genome       Date:  2003-10       Impact factor: 2.957

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