Literature DB >> 15466433

Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6.

Hanne Gro Olsen1, Sigbjørn Lien, Mathieu Gautier, Heidi Nilsen, Arne Roseth, Paul R Berg, Kristil K Sundsaasen, Morten Svendsen, Theo H E Meuwissen.   

Abstract

A QTL affecting milk production traits was previously mapped to an interval of 7.5 cM on chromosome 6 in Norwegian dairy cattle. This article aimed to refine this position by increasing the map density in the region by a set of single-nucleotide polymorphisms and analyzing the data with a combined linkage and linkage disequilibrium approach. Through a series of single- and multitrait and single- and multipoint analyses, the QTL was positioned to an interval surrounded by the genes ABCG2 and LAP3. As no recombinations were detected in this interval, physical mapping was required for further refining. By using radiation hybrid mapping as well as BAC clones, the bovine and human comparative maps in the region are resolved, and the QTL is mapped within a distance of 420 kb.

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Year:  2004        PMID： 15466433      PMCID： PMC1448861          DOI： 10.1534/genetics.104.031559

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  29 in total

1.  Detection of QTL for milk production traits in cattle by application of a specifically developed marker map of BTA6.

Authors:  C Kühn; G Freyer; R Weikard; T Goldammer; M Schwerin
Journal:  Anim Genet       Date:  1999-10       Impact factor: 3.169

2.  Prediction of total genetic value using genome-wide dense marker maps.

Authors:  T H Meuwissen; B J Hayes; M E Goddard
Journal:  Genetics       Date:  2001-04       Impact factor: 4.562

3.  Detection of QTL for milk production on Chromosomes 1 and 6 of Holstein cattle.

Authors:  J Nadesalingam; Y Plante; J P Gibson
Journal:  Mamm Genome       Date:  2001-01       Impact factor: 2.957

4.  Prediction of identity by descent probabilities from marker-haplotypes.

Authors:  T H Meuwissen; M E Goddard
Journal:  Genet Sel Evol       Date:  2001 Nov-Dec       Impact factor: 4.297

5.  Multiple quantitative trait locus analysis of bovine chromosome 6 in the Israeli Holstein population by a daughter design.

Authors:  M Ron; D Kliger; E Feldmesser; E Seroussi; E Ezra; J I Weller
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

6.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  An ordered comparative map of the cattle and human genomes.

Authors:  M R Band; J H Larson; M Rebeiz; C A Green; D W Heyen; J Donovan; R Windish; C Steining; P Mahyuddin; J E Womack; H A Lewin
Journal:  Genome Res       Date:  2000-09       Impact factor: 9.043

8.  Co-assembly of polycystin-1 and -2 produces unique cation-permeable currents.

Authors:  K Hanaoka; F Qian; A Boletta; A K Bhunia; K Piontek; L Tsiokas; V P Sukhatme; W B Guggino; G G Germino
Journal:  Nature       Date:  2000 Dec 21-28       Impact factor: 49.962

9.  Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping.

Authors:  Theo H E Meuwissen; Astrid Karlsen; Sigbjørn Lien; Ingrid Olsaker; Mike E Goddard
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

10.  Construction and characterization of a bovine BAC library with four genome-equivalent coverage.

Authors:  A Eggen; M Gautier; A Billaut; E Petit; H Hayes; P Laurent; C Urban; M Pfister-Genskow; K Eilertsen; M D Bishop
Journal:  Genet Sel Evol       Date:  2001 Sep-Oct       Impact factor: 4.297
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  39 in total

1.  Functional characterization of genetic polymorphisms identified in the promoter region of the bovine PEPS gene.

Authors:  Zhihua Ju; Xue Zheng; Jinming Huang; Chao Qi; Yan Zhang; Jianbin Li; Jifeng Zhong; Changfa Wang
Journal:  DNA Cell Biol       Date:  2012-02-03       Impact factor: 3.311

2.  Identification of a 1.1-Mb region for a carcass weight QTL onbovine Chromosome 14.

Authors:  Kazunori Mizoshita; Atsushi Takano; Toshio Watanabe; Akiko Takasuga; Yoshikazu Sugimoto
Journal:  Mamm Genome       Date:  2005-07       Impact factor: 2.957

3.  Genetic and haplotypic structure in 14 European and African cattle breeds.

Authors:  Mathieu Gautier; Thomas Faraut; Katayoun Moazami-Goudarzi; Vincent Navratil; Mario Foglio; Cécile Grohs; Anne Boland; Jean-Guillaume Garnier; Didier Boichard; G Mark Lathrop; Ivo G Gut; André Eggen
Journal:  Genetics       Date:  2007-08-24       Impact factor: 4.562

4.  Multipoint identity-by-descent prediction using dense markers to map quantitative trait loci and estimate effective population size.

Authors:  Theo H E Meuwissen; Mike E Goddard
Journal:  Genetics       Date:  2007-06-11       Impact factor: 4.562

5.  Effect of ABCG2, PPARGC1A, OLR1 and SCD1 gene polymorphism on estimated breeding values for functional and production traits in Polish Holstein-Friesian bulls.

Authors:  J Komisarek; Z Dorynek
Journal:  J Appl Genet       Date:  2009       Impact factor: 3.240

6.  Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Authors:  Lingyang Xu; Derek M Bickhart; John B Cole; Steven G Schroeder; Jiuzhou Song; Curtis P Van Tassell; Tad S Sonstegard; George E Liu
Journal:  Mol Biol Evol       Date:  2014-11-26       Impact factor: 16.240

7.  Modelling QTL effect on BTA06 using random regression test day models.

Authors:  T Suchocki; J Szyda; Q Zhang
Journal:  J Appl Genet       Date:  2012-10-02       Impact factor: 3.240

8.  Comparative transcriptome analyses reveal conserved and distinct mechanisms in ovine and bovine lactation.

Authors:  Mini Singh; Peter C Thomson; Paul A Sheehy; Herman W Raadsma
Journal:  Funct Integr Genomics       Date:  2013-01-17       Impact factor: 3.410

9.  Quantitative trait locus-by-environment interaction for milk yield traits on Bos taurus autosome 6.

Authors:  Marie Lillehammer; Mike E Goddard; Heidi Nilsen; Erling Sehested; Hanne Gro Olsen; Sigbjørn Lien; Theo H E Meuwissen
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

10.  A strategy for QTL fine-mapping using a dense SNP map.

Authors:  Joaquim Tarres; François Guillaume; Sébastien Fritz
Journal:  BMC Proc       Date:  2009-02-23
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