Literature DB >> 12165425

Transmitting the signal of excess nitrogen in Saccharomyces cerevisiae from the Tor proteins to the GATA factors: connecting the dots.

Terrance G Cooper1.   

Abstract

Major advances have recently occurred in our understanding of GATA factor-mediated, nitrogen catabolite repression (NCR)-sensitive gene expression in Saccharomyces cerevisiae. Under nitrogen-rich conditions, the GATA family transcriptional activators, Gln3 and Gat1, form complexes with Ure2, and are localized to the cytoplasm, which decreases NCR-sensitive expression. Under nitrogen-limiting conditions, Gln3 and Gat1 are dephosphorylated, move from the cytoplasm to the nucleus, in wild-type but not rna1 and srp1 mutants, and increase expression of NCR-sensitive genes. 'Induction' of NCR-sensitive gene expression and dephosphorylation of Gln3 (and Ure2 in some laboratories) when cells are treated with rapamycin implicates the Tor1/2 signal transduction pathway in this regulation. Mks1 is posited to be a negative regulator of Ure2, positive regulator of retrograde gene expression and to be itself negatively regulated by Tap42. In addition to Tap42, phosphatases Sit4 and Pph3 are also argued by some to participate in the regulatory pathway. Although a treasure trove of information has recently become available, much remains unknown (and sometimes controversial) with respect to the precise biochemical functions and regulatory pathway connections of Tap42, Sit4, Pph3, Mks1 and Ure2, and how precisely Gln3 and Gat1 are prevented from entering the nucleus. The purpose of this review is to provide background information needed by students and investigators outside of the field to follow and evaluate the rapidly evolving literature in this exciting field.

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Year:  2002        PMID: 12165425      PMCID: PMC4384438          DOI: 10.1111/j.1574-6976.2002.tb00612.x

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  60 in total

1.  Gln3p nuclear localization and interaction with Ure2p in Saccharomyces cerevisiae.

Authors:  A A Kulkarni; A T Abul-Hamd; R Rai; H El Berry; T G Cooper
Journal:  J Biol Chem       Date:  2001-06-14       Impact factor: 5.157

2.  Upstream induction sequence, the cis-acting element required for response to the allantoin pathway inducer and enhancement of operation of the nitrogen-regulated upstream activation sequence in Saccharomyces cerevisiae.

Authors:  H J van Vuuren; J R Daugherty; R Rai; T G Cooper
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

3.  Interaction of the GATA factor Gln3p with the nitrogen regulator Ure2p in Saccharomyces cerevisiae.

Authors:  D Blinder; P W Coschigano; B Magasanik
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

Review 4.  The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae.

Authors:  E G ter Schure; N A van Riel; C T Verrips
Journal:  FEMS Microbiol Rev       Date:  2000-01       Impact factor: 16.408

5.  Ureidosuccinic acid uptake in yeast and some aspects of its regulation.

Authors:  R Drillien; F Lacroute
Journal:  J Bacteriol       Date:  1972-01       Impact factor: 3.490

6.  Mutation affecting the specific regulatory control of lysine biosynthetic enzymes in Saccharomyces cerevisiae.

Authors:  F Ramos; J M Wiame
Journal:  Mol Gen Genet       Date:  1985

7.  TOR kinase domains are required for two distinct functions, only one of which is inhibited by rapamycin.

Authors:  X F Zheng; D Florentino; J Chen; G R Crabtree; S L Schreiber
Journal:  Cell       Date:  1995-07-14       Impact factor: 41.582

8.  Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast.

Authors:  J Heitman; N R Movva; M N Hall
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

9.  Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast.

Authors:  Y Jiang; J R Broach
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

10.  Mechanism of metabolic control. Target of rapamycin signaling links nitrogen quality to the activity of the Rtg1 and Rtg3 transcription factors.

Authors:  A Komeili; K P Wedaman; E K O'Shea; T Powers
Journal:  J Cell Biol       Date:  2000-11-13       Impact factor: 10.539

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  157 in total

1.  Amyloid of the Candida albicans Ure2p prion domain is infectious and has an in-register parallel β-sheet structure.

Authors:  Abbi Engel; Frank Shewmaker; Herman K Edskes; Fred Dyda; Reed B Wickner
Journal:  Biochemistry       Date:  2011-06-15       Impact factor: 3.162

2.  Gln3 phosphorylation and intracellular localization in nutrient limitation and starvation differ from those generated by rapamycin inhibition of Tor1/2 in Saccharomyces cerevisiae.

Authors:  Kathleen H Cox; Ajit Kulkarni; Jennifer J Tate; Terrance G Cooper
Journal:  J Biol Chem       Date:  2003-12-16       Impact factor: 5.157

3.  Tor1/2 regulation of retrograde gene expression in Saccharomyces cerevisiae derives indirectly as a consequence of alterations in ammonia metabolism.

Authors:  Jennifer J Tate; Terrance G Cooper
Journal:  J Biol Chem       Date:  2003-07-07       Impact factor: 5.157

4.  Synergistic operation of four cis-acting elements mediate high level DAL5 transcription in Saccharomyces cerevisiae.

Authors:  Rajendra Rai; Jon R Daugherty; Jennifer J Tate; Thomas D Buford; Terrance G Cooper
Journal:  FEMS Yeast Res       Date:  2004-10       Impact factor: 2.796

Review 5.  Transcriptional regulation in yeast during diauxic shift and stationary phase.

Authors:  Luciano Galdieri; Swati Mehrotra; Sean Yu; Ales Vancura
Journal:  OMICS       Date:  2010-09-23

6.  Target of rapamycin (TOR) plays a critical role in triacylglycerol accumulation in microalgae.

Authors:  Sousuke Imamura; Yasuko Kawase; Ikki Kobayashi; Toshiyuki Sone; Atsuko Era; Shin-Ya Miyagishima; Mie Shimojima; Hiroyuki Ohta; Kan Tanaka
Journal:  Plant Mol Biol       Date:  2015-09-08       Impact factor: 4.076

7.  Epithelial lineages of the small intestine have unique patterns of GATA expression.

Authors:  Mary R Dusing; Dan A Wiginton
Journal:  J Mol Histol       Date:  2005-02       Impact factor: 2.611

8.  Structure theorems and the dynamics of nitrogen catabolite repression in yeast.

Authors:  Erik M Boczko; Terrance G Cooper; Tomas Gedeon; Konstantin Mischaikow; Deborah G Murdock; Siddharth Pratap; K Sam Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

Review 9.  Hsp70 structure, function, regulation and influence on yeast prions.

Authors:  Deepak Sharma; Daniel C Masison
Journal:  Protein Pept Lett       Date:  2009       Impact factor: 1.890

10.  Interaction with Tap42 is required for the essential function of Sit4 and type 2A phosphatases.

Authors:  Huamin Wang; Xiaodong Wang; Yu Jiang
Journal:  Mol Biol Cell       Date:  2003-07-25       Impact factor: 4.138

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