Literature DB >> 12140252

Accounting for background nucleotide composition when measuring codon usage bias.

John A Novembre.   

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Year:  2002        PMID： 12140252     DOI： 10.1093/oxfordjournals.molbev.a004201

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN： 0737-4038            Impact factor:   16.240


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  118 in total

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2.  Codon usage patterns in cytochrome oxidase I across multiple insect orders.

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3.  Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization.

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4.  Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales.

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5.  Detecting positive and purifying selection at synonymous sites in yeast and worm.

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Journal:  Mol Biol Evol       Date:  2010-03-15       Impact factor: 16.240

6.  Measuring the coding potential of genomic sequences through a combination of triplet occurrence patterns and RNY preference.

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7.  Performance of the translational apparatus varies with the ecological strategies of bacteria.

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Journal:  J Bacteriol       Date:  2007-02-02       Impact factor: 3.490

8.  Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes.

Authors:  Hong Qin; Wei Biao Wu; Josep M Comeron; Martin Kreitman; Wen-Hsiung Li
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

9.  Selection on GGU and CGU codons in the high expression genes in bacteria.

Authors:  Siddhartha Sankar Satapathy; Bhesh Raj Powdel; Malay Dutta; Alak Kumar Buragohain; Suvendra Kumar Ray
Journal:  J Mol Evol       Date:  2013-11-23       Impact factor: 2.395

10.  Analysis of synonymous codon usage in the UL24 gene of duck enteritis virus.

Authors:  Renyong Jia; Anchun Cheng; Mingshu Wang; Hongyi Xin; Yufei Guo; Dekang Zhu; Xuefeng Qi; Lichan Zhao; Han Ge; Xiaoyue Chen
Journal:  Virus Genes       Date:  2008-10-29       Impact factor: 2.332
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