Literature DB >> 12139607

RNA editing: complexity and complications.

Kenneth Stuart1, Aswini K Panigrahi.   

Abstract

RNA editing in Trypanosomatids creates functional mitochondrial mRNAs by extensive uridylate (U) insertion and deletion as specified by small guide RNAs (gRNAs). Editing is catalysed by the multiprotein editosome. Over 20 of its protein components have been identified and additional proteins are likely to function in editing and its regulation. The functions of only a few editosome proteins have been determined. Surprisingly, there are related pairs or sets of editosome proteins, and insertion and deletion editing appear to be functionally and perhaps spatially separate. A model for the editosome is proposed, which has a catalysis domain with separate sectors for insertion and deletion editing. It also contains domains for anchor duplex and upstream RNA binding, which position the sequence to be edited in the catalysis domain.

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Year:  2002        PMID: 12139607     DOI: 10.1046/j.1365-2958.2002.03028.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  44 in total

1.  Comparative analysis of editosome proteins in trypanosomatids.

Authors:  Elizabeth A Worthey; Achim Schnaufer; I Saira Mian; Kenneth Stuart; Reza Salavati
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  A high-order trans-membrane structural linkage is responsible for mitochondrial genome positioning and segregation by flagellar basal bodies in trypanosomes.

Authors:  Emmanuel O Ogbadoyi; Derrick R Robinson; Keith Gull
Journal:  Mol Biol Cell       Date:  2003-03-07       Impact factor: 4.138

3.  The sequence and analysis of Trypanosoma brucei chromosome II.

Authors:  Najib M A El-Sayed; Elodie Ghedin; Jinming Song; Annette MacLeod; Frederic Bringaud; Christopher Larkin; David Wanless; Jeremy Peterson; Lihua Hou; Sonya Taylor; Alison Tweedie; Nicolas Biteau; Hanif G Khalak; Xiaoying Lin; Tanya Mason; Linda Hannick; Elisabet Caler; Gaëlle Blandin; Daniella Bartholomeu; Anjana J Simpson; Samir Kaul; Hong Zhao; Grace Pai; Susan Van Aken; Teresa Utterback; Brian Haas; Hean L Koo; Lowell Umayam; Bernard Suh; Caroline Gerrard; Vanessa Leech; Rong Qi; Shiguo Zhou; David Schwartz; Tamara Feldblyum; Steven Salzberg; Andrew Tait; C Michael R Turner; Elisabetta Ullu; Owen White; Sara Melville; Mark D Adams; Claire M Fraser; John E Donelson
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

4.  Identification of novel components of Trypanosoma brucei editosomes.

Authors:  Aswini K Panigrahi; Achim Schnaufer; Nancy L Ernst; Bingbing Wang; Nicole Carmean; Reza Salavati; Kenneth Stuart
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

5.  In Trypanosoma brucei RNA editing, band II enables recognition specifically at each step of the U insertion cycle.

Authors:  Julie A Law; Catherine E Huang; Sean F O'Hearn; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

Review 6.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

7.  Compositionally and functionally distinct editosomes in Trypanosoma brucei.

Authors:  Aswini K Panigrahi; Nancy Lewis Ernst; Gonzalo J Domingo; Michele Fleck; Reza Salavati; Kenneth D Stuart
Journal:  RNA       Date:  2006-04-12       Impact factor: 4.942

8.  Evidence for U-tail stabilization of gRNA/mRNA interactions in kinetoplastid RNA editing.

Authors:  Donna J Koslowsky; Larissa Reifur; Laura E Yu; Weiqin Chen
Journal:  RNA Biol       Date:  2004-05-31       Impact factor: 4.652

9.  Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae.

Authors:  Raj D Pai; Lisa M Oppegard; Gregory J Connell
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

10.  Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei.

Authors:  Aswini K Panigrahi; Thomas E Allen; Kenneth Stuart; Paul A Haynes; Steven P Gygi
Journal:  J Am Soc Mass Spectrom       Date:  2003-07       Impact factor: 3.109

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