Literature DB >> 12117790

About the use of protein models.

Manuel C Peitsch1.   

Abstract

Protein models can be of great assistance in functional genomics, as they provide the structural insights often necessary to understand protein function. Although comparative modelling is far from yielding perfect structures, this is still the most reliable method and the quality of the predictions is now well understood. Models can be classified according to their correctness and accuracy, which will impact their applicability and usefulness in functional genomics and a variety of situations.

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Year:  2002        PMID: 12117790     DOI: 10.1093/bioinformatics/18.7.934

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  14 in total

1.  SWISS-MODEL: An automated protein homology-modeling server.

Authors:  Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C Peitsch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Protein structure homology modeling using SWISS-MODEL workspace.

Authors:  Lorenza Bordoli; Florian Kiefer; Konstantin Arnold; Pascal Benkert; James Battey; Torsten Schwede
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

3.  Mutations in the CYP1B1 gene may contribute to juvenile-onset open-angle glaucoma.

Authors:  C-C Su; Y-F Liu; S-Y Li; J-J Yang; Y-C Yen
Journal:  Eye (Lond)       Date:  2012-08-10       Impact factor: 3.775

4.  Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal.

Authors:  Lorenza Bordoli; Torsten Schwede
Journal:  Methods Mol Biol       Date:  2012

5.  Exploring CYP1A1 as anticancer target: homology modeling and in silico inhibitor design.

Authors:  Abhay T Sangamwar; Leena B Labhsetwar; Sharad V Kuberkar
Journal:  J Mol Model       Date:  2008-07-30       Impact factor: 1.810

6.  PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools.

Authors:  Adeel Malik; Ahmad Firoz; Vivekanand Jha; Shandar Ahmad
Journal:  Adv Bioinformatics       Date:  2010-06-29

7.  A novel missense mutation in the connexin30 causes nonsyndromic hearing loss.

Authors:  Wen-Hung Wang; Yu-Fan Liu; Ching-Chyuan Su; Mao-Chang Su; Shuan-Yow Li; Jiann-Jou Yang
Journal:  PLoS One       Date:  2011-06-24       Impact factor: 3.240

8.  The PMDB Protein Model Database.

Authors:  Tiziana Castrignanò; Paolo D'Onorio De Meo; Domenico Cozzetto; Ivano Giuseppe Talamo; Anna Tramontano
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  The Protein Model Portal.

Authors:  Konstantin Arnold; Florian Kiefer; Jürgen Kopp; James N D Battey; Michael Podvinec; John D Westbrook; Helen M Berman; Lorenza Bordoli; Torsten Schwede
Journal:  J Struct Funct Genomics       Date:  2008-11-27

10.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

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