Literature DB >> 12112707

Crystal structure of Bacillus subtilis ioli shows endonuclase IV fold with altered Zn binding.

R-G Zhang1, I Dementieva, N Duke, F Collart, E Quaite-Randall, R Alkire, L Dieckman, N Maltsev, O Korolev, A Joachimiak.   

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Year:  2002        PMID： 12112707      PMCID： PMC2792003          DOI： 10.1002/prot.10159

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  10 in total

1.  Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis.

Authors:  D J Hosfield; Y Guan; B J Haas; R P Cunningham; J A Tainer
Journal:  Cell       Date:  1999-08-06       Impact factor: 41.582

2.  Automated protein model building combined with iterative structure refinement.

Authors:  A Perrakis; R Morris; V S Lamzin
Journal:  Nat Struct Biol       Date:  1999-05

3.  Taking MAD to the extreme: ultrafast protein structure determination.

Authors:  M A Walsh; I Dementieva; G Evans; R Sanishvili; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-06

4.  Organization and transcription of the myo-inositol operon, iol, of Bacillus subtilis.

Authors:  K I Yoshida; D Aoyama; I Ishio; T Shibayama; Y Fujita
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

5.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 8.  The TIM-barrel fold: a versatile framework for efficient enzymes.

Authors:  R K Wierenga
Journal:  FEBS Lett       Date:  2001-03-16       Impact factor: 4.124

9.  A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose.

Authors:  M Whitlow; A J Howard; B C Finzel; T L Poulos; E Winborne; G L Gilliland
Journal:  Proteins       Date:  1991

10.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04
  10 in total
  8 in total

1.  Automation of protein purification for structural genomics.

Authors:  Youngchang Kim; Irina Dementieva; Min Zhou; Ruiying Wu; Lour Lezondra; Pearl Quartey; Grazyna Joachimiak; Olga Korolev; Hui Li; Andrzej Joachimiak
Journal:  J Struct Funct Genomics       Date:  2004

2.  Isolation and Characterization of Levoglucosan-Metabolizing Bacteria.

Authors:  Ajay S Arya; Minh T H Hang; Mark A Eiteman
Journal:  Appl Environ Microbiol       Date:  2021-12-15       Impact factor: 5.005

3.  Structural and functional analysis of AsbF: origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis.

Authors:  Brian F Pfleger; Youngchang Kim; Tyler D Nusca; Natalia Maltseva; Jung Yeop Lee; Christopher M Rath; Jamie B Scaglione; Brian K Janes; Erica C Anderson; Nicholas H Bergman; Philip C Hanna; Andrzej Joachimiak; David H Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-27       Impact factor: 11.205

4.  Identification of the ligand in the structure of the protein with unknown function STM4435 from Salmonella typhimurium.

Authors:  K M Boyko; M A Gorbacheva; T V Rakitina; D A Korzhenevsky; P V Dorovatovsky; A V Lipkin; V O Popov
Journal:  Dokl Biochem Biophys       Date:  2014-08-30       Impact factor: 0.788

5.  Structure of L-xylulose-5-Phosphate 3-epimerase (UlaE) from the anaerobic L-ascorbate utilization pathway of Escherichia coli: identification of a novel phosphate binding motif within a TIM barrel fold.

Authors:  Rong Shi; Marco Pineda; Eunice Ajamian; Qizhi Cui; Allan Matte; Miroslaw Cygler
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

6.  Genetic modification of Bacillus subtilis for production of D-chiro-inositol, an investigational drug candidate for treatment of type 2 diabetes and polycystic ovary syndrome.

Authors:  Ken-ichi Yoshida; Masanori Yamaguchi; Tetsuro Morinaga; Maya Ikeuchi; Masaki Kinehara; Hitoshi Ashida
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

7.  Identification of a Novel Cobamide Remodeling Enzyme in the Beneficial Human Gut Bacterium Akkermansia muciniphila.

Authors:  Kenny C Mok; Olga M Sokolovskaya; Alexa M Nicolas; Zachary F Hallberg; Adam Deutschbauer; Hans K Carlson; Michiko E Taga
Journal:  mBio       Date:  2020-12-08       Impact factor: 7.867

8.  DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions.

Authors:  Mu Gao; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2008-05-31       Impact factor: 16.971
  8 in total

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