Literature DB >> 12112683

Towards atomic resolution with crystals grown in gel: the case of thaumatin seen at room temperature.

Claude Sauter1, Bernard Lorber, Richard Giegé.   

Abstract

One reason for introducing a gel in the crystallization medium of proteins is its ability to reduce convection in solution. This can lead to better nucleation and growth conditions, and to crystals having enhanced diffraction properties. We report here the X-ray characterization at room temperature of high-quality crystals of the intensely sweet thaumatin prepared in a sodium tartrate solution gelified with 0.15% (m/v) agarose. Using a synchrotron radiation, these crystals diffracted to a previously unachieved resolution. A diffraction dataset was collected from four crystals at a resolution of 1.2 A with a R(sym) of 3.6% and a completeness of 99%. Refinement was carried out to a final crystallographic R-factor of 12.0%. The quality of the electron density map allowed for the observation of fine structural details in the protein and its solvation shell. Crystallization in gel might be used more generally to improve the quality of macromolecular crystals. Advantages provided by the gelified medium in the frame of structural studies are emphasized. Copyright 2002 Wiley-Liss, Inc.

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Year:  2002        PMID: 12112683     DOI: 10.1002/prot.10125

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  7 in total

1.  High-resolution structure of the recombinant sweet-tasting protein thaumatin I.

Authors:  Tetsuya Masuda; Keisuke Ohta; Bunzo Mikami; Naofumi Kitabatake
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-24

2.  In situ data collection and structure refinement from microcapillary protein crystallization.

Authors:  Maneesh K Yadav; Cory J Gerdts; Ruslan Sanishvili; Ward W Smith; L Spencer Roach; Rustem F Ismagilov; Peter Kuhn; Raymond C Stevens
Journal:  J Appl Crystallogr       Date:  2005-12       Impact factor: 3.304

3.  Kinetic analysis of protein crystal nucleation in gel matrix.

Authors:  Lei Wang; Xiang-Yang Liu
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

4.  The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography.

Authors:  Haley Marshall; Murugappan Venkat; Nang San Hti Lar Seng; Jackson Cahn; Douglas H Juers
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-12-09

5.  Three-dimensional, non-invasive, cross-sectional imaging of protein crystals using ultrahigh resolution optical coherence tomography.

Authors:  Norihiko Nishizawa; Shutaro Ishida; Mika Hirose; Shigeru Sugiyama; Tsuyoshi Inoue; Yusuke Mori; Kazuyoshi Itoh; Hiroyoshi Matsumura
Journal:  Biomed Opt Express       Date:  2012-03-15       Impact factor: 3.732

Review 6.  An overview of biological macromolecule crystallization.

Authors:  Irene Russo Krauss; Antonello Merlino; Alessandro Vergara; Filomena Sica
Journal:  Int J Mol Sci       Date:  2013-05-31       Impact factor: 5.923

7.  In vacuo X-ray data collection from graphene-wrapped protein crystals.

Authors:  Anna J Warren; Adam D Crawshaw; Jose Trincao; Pierre Aller; Simon Alcock; Ioana Nistea; Paula S Salgado; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26
  7 in total

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