Literature DB >> 18835910

Kinetic analysis of protein crystal nucleation in gel matrix.

Lei Wang1, Xiang-Yang Liu.   

Abstract

The effect of agarose on nucleation of hen egg white lysozyme crystal was examined quantitatively using a temperature-jumping technique. For the first time, to our knowledge, the inhibition of agarose during the nucleation of lysozyme was quantified in two respects: a), the effect of increasing interfacial nucleation barrier, described by the so-called interfacial correlation parameter f(m); and b), the ratio of diffusion to interfacial kinetics obtained from dynamic surface tension measurements. It follows from a dynamic surface tension analysis that the agarose network inhibits the nucleation of lysozyme by means of an enhancement of the repulsion and interfacial structure mismatch between foreign bodies and lysozyme crystals, slowing down the diffusion process of the protein molecules and clusters toward the crystal-fluid interface and inhibiting the rearrangement of protein molecules at the interface. Our results, based on ultraviolet-visible spectroscopy, also show no evidence of the supersaturation enhancement effect in protein agarose gels. The effects of nucleation suppression and transport limitation in gels result in bigger, fewer, and perhaps better quality protein crystals. The understandings obtained in this study will improve our knowledge in controlling the crystallization of proteins and other biomolecules.

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Year:  2008        PMID: 18835910      PMCID: PMC2599815          DOI: 10.1529/biophysj.108.135574

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  The effect of temperature and solution pH on the nucleation of tetragonal lysozyme crystals.

Authors:  R A Judge; R S Jacobs; T Frazier; E H Snell; M L Pusey
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Nucleation of protein crystals in a wide continuous supersaturation gradient.

Authors:  A Penkova; N Chayen; E Saridakis; Chr N Nanev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

3.  In situ observation of colloidal monolayer nucleation driven by an alternating electric field.

Authors:  Ke-Qin Zhang; Xiang Y Liu
Journal:  Nature       Date:  2004-06-17       Impact factor: 49.962

4.  Study of nucleation-related phenomena in lysozyme solutions. Application to gel growth.

Authors:  M C Robert; Y Bernard; F Lefaucheux
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

5.  The use of two novel methods to grow protein crystals by microdialysis and vapor diffusion in an agarose gel.

Authors:  K J Thiessen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

6.  New crystal form of recombinant murine interferon-beta.

Authors:  S Matsuda; T Senda; S Itoh; G Kawano; H Mizuno; Y Mitsui
Journal:  J Biol Chem       Date:  1989-08-15       Impact factor: 5.157

7.  Screening of protein crystallization conditions on a microfluidic chip using nanoliter-size droplets.

Authors:  Bo Zheng; L Spencer Roach; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

8.  From surface self-assembly to crystallization: prediction of protein crystallization conditions.

Authors:  Yanwei Jia; Xiang-Yang Liu
Journal:  J Phys Chem B       Date:  2006-04-06       Impact factor: 2.991

9.  Lysozyme crystal growth, as observed by small angle X-ray scattering, proceeds without crystallization intermediates.

Authors:  S Finet; F Bonneté; J Frouin; K Provost; A Tardieu
Journal:  Eur Biophys J       Date:  1998       Impact factor: 1.733

10.  Crystallization of biological macromolecules using agarose gel.

Authors:  Christian Biertümpfel; Jérôme Basquin; Dietrich Suck; Claude Sauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26
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