Literature DB >> 12102546

Automated PCR/sequence template purification.

S C Clarke1, M A Diggle.   

Abstract

A commercially available filtration method is described for the purification of polymerase chain reaction (PCR) templates and sequence-labeled products. The methodology is described for the automation of this application and its use on a high-throughput liquid handling robot and capillary-based automated DNA sequencer. The application provides good-quality DNA, is relatively cheap, and can be used in either 96- or 384-well format.

Mesh:

Year:  2002        PMID: 12102546     DOI: 10.1385/MB:21:3:221

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  14 in total

Review 1.  Molecular techniques: divide or share.

Authors:  M Boxer
Journal:  J Clin Pathol       Date:  2000-01       Impact factor: 3.411

Review 2.  Molecular bacteriology: a diagnostic tool for the millennium.

Authors:  T L Pitt; N A Saunders
Journal:  J Clin Pathol       Date:  2000-01       Impact factor: 3.411

Review 3.  From microbial genome sequence to applications.

Authors:  G M Weinstock; D Smajs; J Hardham; S J Norris
Journal:  Res Microbiol       Date:  2000-03       Impact factor: 3.992

4.  Isolation of genomic DNA from blood using a novel filter-based DNA purification technology.

Authors:  M P Baker; A Mitchell; C Bridge; S Martin; F Holder; N D Pathirana; A Jarvis; N Butt
Journal:  Biotechniques       Date:  2001-07       Impact factor: 1.993

Review 5.  Principles and applications of methods for DNA-based typing of microbial organisms.

Authors:  D M Olive; P Bean
Journal:  J Clin Microbiol       Date:  1999-06       Impact factor: 5.948

6.  Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms.

Authors:  M C Maiden; J A Bygraves; E Feil; G Morelli; J E Russell; R Urwin; Q Zhang; J Zhou; K Zurth; D A Caugant; I M Feavers; M Achtman; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

7.  Method for 96-well M13 DNA template preparations for large-scale sequencing.

Authors:  B Andersson; J Lu; K E Edwards; D M Muzny; R A Gibbs
Journal:  Biotechniques       Date:  1996-06       Impact factor: 1.993

8.  Semiautomation of multilocus sequence typing for the characterization of clinical isolates of Neisseria meningitidis.

Authors:  S C Clarke; M A Diggle; G F Edwards
Journal:  J Clin Microbiol       Date:  2001-09       Impact factor: 5.948

9.  Introduction of an automated service for the laboratory confirmation of meningococcal disease in Scotland.

Authors:  S C Clarke; M A Diggle; J A Reid; L Thom; G F Edwards
Journal:  J Clin Pathol       Date:  2001-07       Impact factor: 3.411

10.  A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease.

Authors:  Mark C Enright; Brian G Spratt
Journal:  Microbiology (Reading)       Date:  1998-11       Impact factor: 2.777

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  6 in total

1.  A novel method for preparing single-stranded DNA for pyrosequencing.

Authors:  Matthew A Diggle; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2003-06       Impact factor: 2.695

Review 2.  Genotypic characterization of Neisseria meningitidis using Pyrosequencing.

Authors:  Matthew A Diggle; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2004-10       Impact factor: 2.695

3.  Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains.

Authors:  Brian O'Farrell; Jana K Haase; Vimalkumar Velayudhan; Ronan A Murphy; Mark Achtman
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

4.  Automated pneumococcal MLST using liquid-handling robotics and a capillary DNA sequencer.

Authors:  Johanna Jefferies; Stuart C Clarke; Mathew A Diggle; Andrew Smith; Chris Dowson; Tim Mitchell
Journal:  Mol Biotechnol       Date:  2003-07       Impact factor: 2.860

5.  Simultaneous nasopharyngeal carriage of two pneumococcal multilocus sequence types with a serotype 3 phenotype.

Authors:  Donald Inverarity; Mathew Diggle; Roisin Ure; Diego Santana-Hernandez; Peter Altstadt; Timothy Mitchell; Giles Edwards
Journal:  Int J Microbiol       Date:  2010-12-01

6.  Death or survival from invasive pneumococcal disease in Scotland: associations with serogroups and multilocus sequence types.

Authors:  Donald Inverarity; Karen Lamb; Mathew Diggle; Chris Robertson; David Greenhalgh; Tim J Mitchell; Andrew Smith; Johanna M C Jefferies; Stuart C Clarke; Jim McMenamin; Giles F S Edwards
Journal:  J Med Microbiol       Date:  2011-03-10       Impact factor: 2.472

  6 in total

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