Literature DB >> 12101121

MicroRNAs in plants.

Brenda J Reinhart1, Earl G Weinstein, Matthew W Rhoades, Bonnie Bartel, David P Bartel.   

Abstract

MicroRNAs (miRNAs) are an extensive class of ~22-nucleotide noncoding RNAs thought to regulate gene expression in metazoans. We find that miRNAs are also present in plants, indicating that this class of noncoding RNA arose early in eukaryotic evolution. In this paper 16 Arabidopsis miRNAs are described, many of which have differential expression patterns in development. Eight are absolutely conserved in the rice genome. The plant miRNA loci potentially encode stem-loop precursors similar to those processed by Dicer (a ribonuclease III) in animals. Mutation of an Arabidopsis Dicer homolog, CARPEL FACTORY, prevents the accumulation of miRNAs, showing that similar mechanisms direct miRNA processing in plants and animals. The previously described roles of CARPEL FACTORY in the development of Arabidopsis embryos, leaves, and floral meristems suggest that the miRNAs could play regulatory roles in the development of plants as well as animals.

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Year:  2002        PMID: 12101121      PMCID: PMC186362          DOI: 10.1101/gad.1004402

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  50 in total

1.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells.

Authors:  S M Hammond; E Bernstein; D Beach; G J Hannon
Journal:  Nature       Date:  2000-03-16       Impact factor: 49.962

2.  A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.

Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

Review 3.  RNAi: nature abhors a double-strand.

Authors:  György Hutvágner; Phillip D Zamore
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

4.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

5.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

6.  Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.

Authors:  A Grishok; A E Pasquinelli; D Conte; N Li; S Parrish; I Ha; D L Baillie; A Fire; G Ruvkun; C C Mello
Journal:  Cell       Date:  2001-07-13       Impact factor: 41.582

7.  Identification of tissue-specific microRNAs from mouse.

Authors:  Mariana Lagos-Quintana; Reinhard Rauhut; Abdullah Yalcin; Jutta Meyer; Winfried Lendeckel; Thomas Tuschl
Journal:  Curr Biol       Date:  2002-04-30       Impact factor: 10.834

8.  DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis.

Authors:  J B Morel; P Mourrain; C Béclin; H Vaucheret
Journal:  Curr Biol       Date:  2000 Dec 14-28       Impact factor: 10.834

9.  The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.

Authors:  L D Pysh; J W Wysocka-Diller; C Camilleri; D Bouchez; P N Benfey
Journal:  Plant J       Date:  1999-04       Impact factor: 6.417

10.  The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene.

Authors:  K Lynn; A Fernandez; M Aida; J Sedbrook; M Tasaka; P Masson; M K Barton
Journal:  Development       Date:  1999-02       Impact factor: 6.868

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  761 in total

1.  The microRNAs of Caenorhabditis elegans.

Authors:  Lee P Lim; Nelson C Lau; Earl G Weinstein; Aliaa Abdelhakim; Soraya Yekta; Matthew W Rhoades; Christopher B Burge; David P Bartel
Journal:  Genes Dev       Date:  2003-04-02       Impact factor: 11.361

2.  siRNAs can function as miRNAs.

Authors:  John G Doench; Christian P Petersen; Phillip A Sharp
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

3.  A uniform system for microRNA annotation.

Authors:  Victor Ambros; Bonnie Bartel; David P Bartel; Christopher B Burge; James C Carrington; Xuemei Chen; Gideon Dreyfuss; Sean R Eddy; Sam Griffiths-Jones; Mhairi Marshall; Marjori Matzke; Gary Ruvkun; Thomas Tuschl
Journal:  RNA       Date:  2003-03       Impact factor: 4.942

4.  A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco.

Authors:  Allison C Mallory; Brenda J Reinhart; David Bartel; Vicki B Vance; Lewis H Bowman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-25       Impact factor: 11.205

5.  ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves.

Authors:  Ryan N Douglas; Dan Wiley; Ananda Sarkar; Nathan Springer; Marja C P Timmermans; Michael J Scanlon
Journal:  Plant Cell       Date:  2010-05-07       Impact factor: 11.277

6.  MicroRNA regulated defense responses in Triticum aestivum L. during Puccinia graminis f.sp. tritici infection.

Authors:  Om Prakash Gupta; Vipin Permar; Vikas Koundal; Uday Dhari Singh; Shelly Praveen
Journal:  Mol Biol Rep       Date:  2011-06-02       Impact factor: 2.316

7.  Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis.

Authors:  Gang Liang; Hua He; Yang Li; Fang Wang; Diqiu Yu
Journal:  Plant Physiol       Date:  2013-11-27       Impact factor: 8.340

8.  DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana.

Authors:  Robert J Schmitz; Lewis Hong; Kathleen E Fitzpatrick; Richard M Amasino
Journal:  Genetics       Date:  2007-06       Impact factor: 4.562

9.  MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.

Authors:  Heiko Schoof; Rebecca Ernst; Vladimir Nazarov; Lukas Pfeifer; Hans-Werner Mewes; Klaus F X Mayer
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Highly preserved roles of Brassica MIR172 in polyploid Brassicas: ectopic expression of variants of Brassica MIR172 accelerates floral transition.

Authors:  S M Shivaraj; Aditi Jain; Anandita Singh
Journal:  Mol Genet Genomics       Date:  2018-05-11       Impact factor: 3.291

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