Literature DB >> 12097644

Estimating prokaryotic diversity and its limits.

Thomas P Curtis1, William T Sloan, Jack W Scannell.   

Abstract

The absolute diversity of prokaryotes is widely held to be unknown and unknowable at any scale in any environment. However, it is not necessary to count every species in a community to estimate the number of different taxa therein. It is sufficient to estimate the area under the species abundance curve for that environment. Log-normal species abundance curves are thought to characterize communities, such as bacteria, which exhibit highly dynamic and random growth. Thus, we are able to show that the diversity of prokaryotic communities may be related to the ratio of two measurable variables: the total number of individuals in the community and the abundance of the most abundant members of that community. We assume that either the least abundant species has an abundance of 1 or Preston's canonical hypothesis is valid. Consequently, we can estimate the bacterial diversity on a small scale (oceans 160 per ml; soil 6,400-38,000 per g; sewage works 70 per ml). We are also able to speculate about diversity at a larger scale, thus the entire bacterial diversity of the sea may be unlikely to exceed 2 x 10(6), while a ton of soil could contain 4 x 10(6) different taxa. These are preliminary estimates that may change as we gain a greater understanding of the nature of prokaryotic species abundance curves. Nevertheless, it is evident that local and global prokaryotic diversity can be understood through species abundance curves and purely experimental approaches to solving this conundrum will be fruitless.

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Year:  2002        PMID: 12097644      PMCID: PMC124953          DOI: 10.1073/pnas.142680199

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

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Authors:  M A Bruns; J R Stephen; G A Kowalchuk; J I Prosser; E A Paul
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2.  The emergence and maintenance of diversity: insights from experimental bacterial populations.

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3.  Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Arctic Ocean.

Authors:  N Bano; J T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

4.  How stable is stable? Function versus community composition.

Authors:  A Fernández; S Huang; S Seston; J Xing; R Hickey; C Criddle; J Tiedje
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

5.  Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity

Authors: 
Journal:  Appl Environ Microbiol       Date:  1998-11       Impact factor: 4.792

6.  Population dynamic models generating the lognormal species abundance distribution.

Authors:  S Engen; R Lande
Journal:  Math Biosci       Date:  1996-03       Impact factor: 2.144

7.  Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis.

Authors:  J J Godon; E Zumstein; P Dabert; F Habouzit; R Moletta
Journal:  Appl Environ Microbiol       Date:  1997-07       Impact factor: 4.792

8.  High diversity in DNA of soil bacteria.

Authors:  V Torsvik; J Goksøyr; F L Daae
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

9.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

Review 10.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

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  260 in total

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Journal:  Microb Ecol       Date:  2003-11-12       Impact factor: 4.552

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3.  Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes.

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Review 4.  How many species of prokaryotes are there?

Authors:  Bess B Ward
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-30       Impact factor: 11.205

5.  Statistical approaches for estimating actinobacterial diversity in marine sediments.

Authors:  James E M Stach; Luis A Maldonado; Douglas G Masson; Alan C Ward; Michael Goodfellow; Alan T Bull
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

6.  Integration of microbial ecology and statistics: a test to compare gene libraries.

Authors:  Patrick D Schloss; Bret R Larget; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

7.  GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis.

Authors:  William E Holben; Kevin P Feris; Anu Kettunen; Juha H A Apajalahti
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

8.  Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

Authors:  Silvia G Acinas; Luisa A Marcelino; Vanja Klepac-Ceraj; Martin F Polz
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490

9.  Niche specialization of terrestrial archaeal ammonia oxidizers.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-08       Impact factor: 11.205

10.  Ecological significance of microdiversity: coexistence among casing soil bacterial strains through allocation of nutritional resource.

Authors:  Devendra Kumar Choudhary; Bhavdish N Johri
Journal:  Indian J Microbiol       Date:  2011-01-26       Impact factor: 2.461

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