Literature DB >> 12095252

Kinetic model of DNA replication in eukaryotic organisms.

John Herrick1, Suckjoon Jun, John Bechhoefer, Aaron Bensimon.   

Abstract

We formulate a kinetic model of DNA replication that quantitatively describes recent results on DNA replication in the in vitro system of Xenopus laevis prior to the mid-blastula transition. The model describes well a large amount of different data within a simple theoretical framework. This allows one, for the first time, to determine the parameters governing the DNA replication program in a eukaryote on a genome-wide basis. In particular, we have determined the frequency of origin activation in time and space during the cell cycle. Although we focus on a specific stage of development, this model can easily be adapted to describe replication in many other organisms, including budding yeast. (c) 2002 Elsevier Science Ltd.

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Year:  2002        PMID: 12095252     DOI: 10.1016/s0022-2836(02)00522-3

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  24 in total

1.  DNA replication origins fire stochastically in fission yeast.

Authors:  Prasanta K Patel; Benoit Arcangioli; Stephen P Baker; Aaron Bensimon; Nicholas Rhind
Journal:  Mol Biol Cell       Date:  2005-10-26       Impact factor: 4.138

2.  DNA replication timing: random thoughts about origin firing.

Authors:  Nicholas Rhind
Journal:  Nat Cell Biol       Date:  2006-12       Impact factor: 28.824

Review 3.  DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI.

Authors:  Daniel M Czajkowsky; Jie Liu; Joyce L Hamlin; Zhifeng Shao
Journal:  J Mol Biol       Date:  2007-10-23       Impact factor: 5.469

Review 4.  Cell cycle regulation of DNA replication.

Authors:  R A Sclafani; T M Holzen
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

Review 5.  Global regulation of genome duplication in eukaryotes: an overview from the epifluorescence microscope.

Authors:  John Herrick; Aaron Bensimon
Journal:  Chromosoma       Date:  2008-01-16       Impact factor: 4.316

6.  S-phase progression in mammalian cells: modelling the influence of nuclear organization.

Authors:  Alex Shaw; Pedro Olivares-Chauvet; Apolinar Maya-Mendoza; Dean A Jackson
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

7.  Mathematical modelling of eukaryotic DNA replication.

Authors:  Olivier Hyrien; Arach Goldar
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

Review 8.  Replication timing and its emergence from stochastic processes.

Authors:  John Bechhoefer; Nicholas Rhind
Journal:  Trends Genet       Date:  2012-04-18       Impact factor: 11.639

9.  Just-in-time DNA replication.

Authors:  Suckjoon Jun; Nick Rhind
Journal:  Physics (College Park Md)       Date:  2008-10-27

10.  Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics.

Authors:  Qing Zhang; Federico Bassetti; Marco Gherardi; Marco Cosentino Lagomarsino
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

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