Literature DB >> 16734439

Probing nitrogen-sensitive steps in the free-radical-mediated deamination of amino alcohols by ethanolamine ammonia-lyase.

Russell R Poyner1, Mark A Anderson, Vahe Bandarian, W Wallace Cleland, George H Reed.   

Abstract

The contribution of C-N bond-breaking/making steps to the rate of the free-radical-mediated deamination of vicinal amino alcohols by adenosylcobalamin-dependent ethanolamine ammonia-lyase has been investigated by 15N isotope effects (IE's) and by electron paramagnetic resonance (EPR) spectroscopy. 15N IE's were determined for three substrates, ethanolamine, (R)-2-aminopropanol, and (S)-2-aminopropanol, using isotope ratio mass spectrometry analysis of the product ammonia. Measurements with all three substrates gave measurable, normal 15N IE's; however, the IE of (S)-2-aminopropanol was approximately 5-fold greater than that of the other two. Reaction mixtures frozen during the steady state show that the 2-aminopropanols give EPR spectra characteristic of the initial substrate radical, whereas ethanolamine gives spectra consistent with a product-related radical (Warncke, K.; Schmidt, J. C.; Kee, S.-C. J. Am. Chem. Soc. 1999, 121, 10522-10528). The steady-state concentration of the radical with (R)-2-aminopropanol is about half that observed with the S isomer, and with (R)-2-aminopropanol, the steady-state level of the radical is further reduced upon deuteration at C1. The results show that relative heights of kinetic barriers differ among the three substrates such that levels or identities of steady-state intermediates differ. 15N-sensitive steps are significant contributors to V/K with (S)-2-aminopropanol.

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Year:  2006        PMID: 16734439      PMCID: PMC2505056          DOI: 10.1021/ja060710q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Hydrazine cation radical in the active site of ethanolamine ammonia-lyase: mechanism-based inactivation by hydroxyethylhydrazine.

Authors:  V Bandarian; G H Reed
Journal:  Biochemistry       Date:  1999-09-21       Impact factor: 3.162

Review 2.  Adenosylcobalamin-dependent isomerases: new insights into structure and mechanism.

Authors:  E N Marsh; C L Drennan
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

Review 3.  Radical carbon skeleton rearrangements: catalysis by coenzyme B12-dependent mutases.

Authors:  Ruma Banerjee
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

4.  Understanding the mechanism of action of B12-dependent ethanolamine ammonia-lyase: synergistic interactions at play.

Authors:  Stacey D Wetmore; David M Smith; Justine T Bennett; Leo Radom
Journal:  J Am Chem Soc       Date:  2002-11-27       Impact factor: 15.419

Review 5.  Radical catalysis in coenzyme B12-dependent isomerization (eliminating) reactions.

Authors:  Tetsuo Toraya
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

6.  15N kinetic isotope effects on uncatalyzed and enzymatic deamination of cytidine.

Authors:  Mark J Snider; Laurie Reinhardt; Richard Wolfenden; W W Cleland
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

7.  Computational exploration of rearrangements related to the vitamin B12-dependent ethanolamine ammonia lyase catalyzed transformation.

Authors:  Marija Semialjac; Helmut Schwarz
Journal:  J Am Chem Soc       Date:  2002-07-31       Impact factor: 15.419

8.  Direct determination of product radical structure reveals the radical rearrangement pathway in a coenzyme B12-dependent enzyme.

Authors:  Kurt Warncke; Jeffrey M Canfield
Journal:  J Am Chem Soc       Date:  2004-05-19       Impact factor: 15.419

9.  Analysis of the electron paramagnetic resonance spectrum of a radical intermediate in the coenzyme B(12)-dependent ethanolamine ammonia-lyase catalyzed reaction of S-2-aminopropanol.

Authors:  Vahe Bandarian; George H Reed
Journal:  Biochemistry       Date:  2002-07-09       Impact factor: 3.162

Review 10.  The many faces of vitamin B12: catalysis by cobalamin-dependent enzymes.

Authors:  Ruma Banerjee; Stephen W Ragsdale
Journal:  Annu Rev Biochem       Date:  2003       Impact factor: 23.643

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  7 in total

1.  Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems.

Authors:  Miao Wang; Chen Zhu; Meghan Kohne; Kurt Warncke
Journal:  Methods Enzymol       Date:  2015-09-14       Impact factor: 1.600

2.  Reaction of the Co(II)-substrate radical pair catalytic intermediate in coenzyme B12-dependent ethanolamine ammonia-lyase in frozen aqueous solution from 190 to 217 K.

Authors:  Chen Zhu; Kurt Warncke
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

3.  Kinetic isolation and characterization of the radical rearrangement step in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Chen Zhu; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

4.  Protein Configurational States Guide Radical Rearrangement Catalysis in Ethanolamine Ammonia-Lyase.

Authors:  Neslihan Ucuncuoglu; Kurt Warncke
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

5.  Two Dynamical Regimes of the Substrate Radical Rearrangement Reaction in B12-Dependent Ethanolamine Ammonia-Lyase Resolve Contributions of Native Protein Configurations and Collective Configurational Fluctuations to Catalysis.

Authors:  Meghan Kohne; Chen Zhu; Kurt Warncke
Journal:  Biochemistry       Date:  2017-06-15       Impact factor: 3.162

6.  Identification of the substrate radical intermediate derived from ethanolamine during catalysis by ethanolamine ammonia-lyase.

Authors:  Güneş Bender; Russell R Poyner; George H Reed
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

7.  The structural model of Salmonella typhimurium ethanolamine ammonia-lyase directs a rational approach to the assembly of the functional [(EutB-EutC)₂]₃ oligomer from isolated subunits.

Authors:  Adonis Miguel Bovell; Kurt Warncke
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

  7 in total

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