Literature DB >> 12087156

Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors.

Li Liu1, Shuqiu Cheng, Anja J van Brabant, Eric B Kmiec.   

Abstract

Synthetic single-stranded DNA vectors have been used to correct point and frameshift mutations in episomal or chromosomal targets in the yeast Saccharomyces cerevisiae. Certain parameters, such as the length of the vector and the genetic background of the organism, have a significant impact on the process of targeted gene repair, and point mutations are corrected at a higher frequency than frameshift mutations. Genetic analyses reveal that expression levels of the recombination/repair genes RAD51, RAD52 and RAD54 can affect the frequency of gene repair. Overexpression of RAD51 enhances the frequency 4-fold for correction of an episomal target and 5-fold for correction of a chromosomal target; overexpression of RAD54 is also effective in stimulating gene repair, to the same extent as RAD51 in the chromosomal target. In sharp contrast, RAD52 gene expression serves to reduce gene repair activity in rescue experiments and in experiments where RAD52 is overexpressed in a wild-type strain. This may suggest an antagonist role for Rad52p. Consistent with this notion, the highest level of targeted repair occurs when the RAD51 gene is overexpressed in a strain of yeast deficient in RAD52 gene function.

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Year:  2002        PMID: 12087156      PMCID: PMC117052          DOI: 10.1093/nar/gkf397

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  38 in total

1.  Rad54 protein is targeted to pairing loci by the Rad51 nucleoprotein filament.

Authors:  A V Mazin; C J Bornarth; J A Solinger; W D Heyer; S C Kowalczykowski
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

2.  Evidence for a four-strand exchange catalyzed by the RecA protein.

Authors:  H B Gamper; Y M Hou; E B Kmiec
Journal:  Biochemistry       Date:  2000-12-12       Impact factor: 3.162

3.  Molecular dissection of interactions between Rad51 and members of the recombination-repair group.

Authors:  L Krejci; J Damborsky; B Thomsen; M Duno; C Bendixen
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

4.  Localized in vivo genotypic and phenotypic correction of the albino mutation in skin by RNA-DNA oligonucleotide.

Authors:  V Alexeev; O Igoucheva; A Domashenko; G Cotsarelis; K Yoon
Journal:  Nat Biotechnol       Date:  2000-01       Impact factor: 54.908

5.  Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides.

Authors:  T Zhu; K Mettenburg; D J Peterson; L Tagliani; C L Baszczynski
Journal:  Nat Biotechnol       Date:  2000-05       Impact factor: 54.908

6.  A plausible mechanism for gene correction by chimeric oligonucleotides.

Authors:  H B Gamper; A Cole-Strauss; R Metz; H Parekh; R Kumar; E B Kmiec
Journal:  Biochemistry       Date:  2000-05-16       Impact factor: 3.162

7.  Rescue of dystrophin expression in mdx mouse muscle by RNA/DNA oligonucleotides.

Authors:  T A Rando; M H Disatnik; L Z Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

8.  The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts.

Authors:  H B Gamper; H Parekh; M C Rice; M Bruner; H Youkey; E B Kmiec
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

9.  Correction of the UDP-glucuronosyltransferase gene defect in the gunn rat model of crigler-najjar syndrome type I with a chimeric oligonucleotide.

Authors:  B T Kren; B Parashar; P Bandyopadhyay; N R Chowdhury; J R Chowdhury; C J Steer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

10.  Superhelicity-driven homologous DNA pairing by yeast recombination factors Rad51 and Rad54.

Authors:  S Van Komen; G Petukhova; S Sigurdsson; S Stratton; P Sung
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

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  22 in total

1.  Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast.

Authors:  Francesca Storici; Christopher L Durham; Dmitry A Gordenin; Michael A Resnick
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-20       Impact factor: 11.205

Review 2.  Targeted gene repair -- in the arena.

Authors:  Eric B Kmiec
Journal:  J Clin Invest       Date:  2003-09       Impact factor: 14.808

3.  Multiple roles for MSH2 in the repair of a deletion mutation directed by modified single-stranded oligonucleotides.

Authors:  Katie Kennedy Maguire; Eric B Kmiec
Journal:  Gene       Date:  2006-08-26       Impact factor: 3.688

4.  Site-specific strand bias in gene correction using single-stranded oligonucleotides.

Authors:  Charlotte B Sørensen; Anne-Margrethe Krogsdam; Marie S Andersen; Karsten Kristiansen; Lars Bolund; Thomas G Jensen
Journal:  J Mol Med (Berl)       Date:  2004-10-27       Impact factor: 4.599

5.  Reaction parameters of targeted gene repair in mammalian cells.

Authors:  Yiling Hu; Hetal Parekh-Olmedo; Miya Drury; Michael Skogen; Eric B Kmiec
Journal:  Mol Biotechnol       Date:  2005-03       Impact factor: 2.695

6.  Site-specific base changes in the coding or promoter region of the human beta- and gamma-globin genes by single-stranded oligonucleotides.

Authors:  Wenxuan Yin; Betsy T Kren; Clifford J Steer
Journal:  Biochem J       Date:  2005-08-15       Impact factor: 3.857

7.  Genetic re-engineering of Saccharomyces cerevisiae RAD51 leads to a significant increase in the frequency of gene repair in vivo.

Authors:  Li Liu; Katie K Maguire; Eric B Kmiec
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

8.  Fluorescent detection and isolation of DNA variants using stabilized RecA-coated oligonucleotides.

Authors:  Michael C Rice; Brandy M Heckman; Yi Liu; Eric B Kmiec
Journal:  Genome Res       Date:  2003-12-12       Impact factor: 9.043

9.  Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombination.

Authors:  Luciana Ferrara; Eric B Kmiec
Journal:  Nucleic Acids Res       Date:  2004-10-05       Impact factor: 16.971

10.  DNA pairing is an important step in the process of targeted nucleotide exchange.

Authors:  Miya D Drury; Eric B Kmiec
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

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