Literature DB >> 15087488

Genetic re-engineering of Saccharomyces cerevisiae RAD51 leads to a significant increase in the frequency of gene repair in vivo.

Li Liu1, Katie K Maguire, Eric B Kmiec.   

Abstract

Oligonucleotides can be used to direct the alteration of single nucleotides in chromosomal genes in yeast. Rad51 protein appears to play a central role in catalyzing the reaction, most likely through its DNA pairing function. Here, we re-engineer the RAD51 gene in order to produce proteins bearing altered levels of known activities. Overexpression of wild-type ScRAD51 elevates the correction of an integrated, mutant hygromycin resistance gene approximately 3-fold. Overexpression of an altered RAD51 gene, which encodes a protein that has a higher affinity for ScRad54, enhances the targeting frequency nearly 100-fold. Another mutation which increases the affinity of Rad51 for DNA was also found to increase gene repair when overexpressed in the cell. Other mutations in the Rad51 protein, such as one that reduces interaction with Rad52, has little or no effect on the frequency of gene repair. These data provide the first evidence that the Rad51 protein can be modified so as to increase the frequency of gene repair in yeast.

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Year:  2004        PMID: 15087488      PMCID: PMC407811          DOI: 10.1093/nar/gkh506

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Evidence for a four-strand exchange catalyzed by the RecA protein.

Authors:  H B Gamper; Y M Hou; E B Kmiec
Journal:  Biochemistry       Date:  2000-12-12       Impact factor: 3.162

Review 2.  The many faces of chromatin remodeling: SWItching beyond transcription.

Authors:  D V Fyodorov; J T Kadonaga
Journal:  Cell       Date:  2001-09-07       Impact factor: 41.582

3.  Molecular dissection of interactions between Rad51 and members of the recombination-repair group.

Authors:  L Krejci; J Damborsky; B Thomsen; M Duno; C Bendixen
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

4.  In vivo site-directed mutagenesis using oligonucleotides.

Authors:  F Storici; L K Lewis; M A Resnick
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

5.  In vitro and in vivo nucleotide exchange directed by chimeric RNA/DNA oligonucleotides in Saccharomyces cerevisae.

Authors:  M C Rice; M Bruner; K Czymmek; E B Kmiec
Journal:  Mol Microbiol       Date:  2001-05       Impact factor: 3.501

6.  The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts.

Authors:  H B Gamper; H Parekh; M C Rice; M Bruner; H Youkey; E B Kmiec
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

7.  SGS1, the Saccharomyces cerevisiae homologue of BLM and WRN, suppresses genome instability and homeologous recombination.

Authors:  K Myung; A Datta; C Chen; R D Kolodner
Journal:  Nat Genet       Date:  2001-01       Impact factor: 38.330

8.  Requirement of yeast SGS1 and SRS2 genes for replication and transcription.

Authors:  S K Lee; R E Johnson; S L Yu; L Prakash; S Prakash
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

9.  In vivo gene repair of point and frameshift mutations directed by chimeric RNA/DNA oligonucleotides and modified single-stranded oligonucleotides.

Authors:  L Liu; M C Rice; E B Kmiec
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

10.  Strand-specificity in the transformation of yeast with synthetic oligonucleotides.

Authors:  T Yamamoto; R P Moerschell; L P Wakem; S Komar-Panicucci; F Sherman
Journal:  Genetics       Date:  1992-08       Impact factor: 4.562

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  14 in total

1.  Multiple roles for MSH2 in the repair of a deletion mutation directed by modified single-stranded oligonucleotides.

Authors:  Katie Kennedy Maguire; Eric B Kmiec
Journal:  Gene       Date:  2006-08-26       Impact factor: 3.688

2.  Site-specific strand bias in gene correction using single-stranded oligonucleotides.

Authors:  Charlotte B Sørensen; Anne-Margrethe Krogsdam; Marie S Andersen; Karsten Kristiansen; Lars Bolund; Thomas G Jensen
Journal:  J Mol Med (Berl)       Date:  2004-10-27       Impact factor: 4.599

3.  Proficient repair in chromatin remodeling defective ino80 mutants of Saccharomyces cerevisiae highlights replication defects as the main contributor to DNA damage sensitivity.

Authors:  Wioletta Czaja; Vyacheslav A Bespalov; John M Hinz; Michael J Smerdon
Journal:  DNA Repair (Amst)       Date:  2010-07-31

4.  Site-specific base changes in the coding or promoter region of the human beta- and gamma-globin genes by single-stranded oligonucleotides.

Authors:  Wenxuan Yin; Betsy T Kren; Clifford J Steer
Journal:  Biochem J       Date:  2005-08-15       Impact factor: 3.857

5.  Oligonucleotide-directed gene repair in wheat using a transient plasmid gene repair assay system.

Authors:  Chongmei Dong; Peter Beetham; Kate Vincent; Peter Sharp
Journal:  Plant Cell Rep       Date:  2006-01-11       Impact factor: 4.570

6.  Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae.

Authors:  Hye Yun Moon; Gyu Hun Sim; Hyeon Jin Kim; Keunpil Kim; Hyun Ah Kang
Journal:  J Microbiol       Date:  2021-12-29       Impact factor: 3.422

7.  Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombination.

Authors:  Luciana Ferrara; Eric B Kmiec
Journal:  Nucleic Acids Res       Date:  2004-10-05       Impact factor: 16.971

8.  Precise Editing at DNA Replication Forks Enables Multiplex Genome Engineering in Eukaryotes.

Authors:  Edward M Barbieri; Paul Muir; Benjamin O Akhuetie-Oni; Christopher M Yellman; Farren J Isaacs
Journal:  Cell       Date:  2017-11-16       Impact factor: 41.582

9.  Yeast oligo-mediated genome engineering (YOGE).

Authors:  James E DiCarlo; Andrew J Conley; Merja Penttilä; Jussi Jäntti; Harris H Wang; George M Church
Journal:  ACS Synth Biol       Date:  2013-11-18       Impact factor: 5.110

10.  DNA breakage associated with targeted gene alteration directed by DNA oligonucleotides.

Authors:  Melissa Bonner; Eric B Kmiec
Journal:  Mutat Res       Date:  2009-05-20       Impact factor: 2.433

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