Literature DB >> 12079668

Genomics and plant cells: application of genomics strategies to Arabidopsis cell biology.

Michael Bevan1.   

Abstract

In this review I seek to describe how the complete catalogue of plant genes and proteins, revealed by genome sequencing, can provide novel insights into cell biology. Many new analytical methods have been developed to digest the flood of genome sequence data, including analysis of the transcriptome, proteome and metabolites. High-throughput analysis of protein targeting and other methods will ascribe new information to proteins and create important links with other large datasets. To fulfil the potential revealed by this genomic information, many challenges have to be met. Among these are organizational changes needed to create common datasets accessible to all scientists, and bioinformatics solutions to capture and integrate diverse datasets. Once harnessed, these new strategies will irrevocably change the way we conduct plant science.

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Mesh:

Year:  2002        PMID: 12079668      PMCID: PMC1692991          DOI: 10.1098/rstb.2002.1084

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  22 in total

1.  Function search in a large transcription factor gene family in Arabidopsis: assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes.

Authors:  R C Meissner; H Jin; E Cominelli; M Denekamp; A Fuertes; R Greco; H D Kranz; S Penfield; K Petroni; A Urzainqui; C Martin; J Paz-Ares; S Smeekens; C Tonelli; B Weisshaar; E Baumann; V Klimyuk; S Marillonnet; K Patel; E Speulman; A F Tissier; D Bouchez; J J Jones; A Pereira; E Wisman
Journal:  Plant Cell       Date:  1999-10       Impact factor: 11.277

2.  Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems.

Authors:  U Roessner; A Luedemann; D Brust; O Fiehn; T Linke; L Willmitzer; A Fernie
Journal:  Plant Cell       Date:  2001-01       Impact factor: 11.277

3.  National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them.

Authors:  J Chory; J R Ecker; S Briggs; M Caboche; G M Coruzzi; D Cook; J Dangl; S Grant; M L Guerinot; S Henikoff; R Martienssen; K Okada; N V Raikhel; C R Somerville; D Weigel
Journal:  Plant Physiol       Date:  2000-06       Impact factor: 8.340

4.  Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.

Authors:  S L Harmer; J B Hogenesch; M Straume; H S Chang; B Han; T Zhu; X Wang; J A Kreps; S A Kay
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

5.  Wall-associated kinases are expressed throughout plant development and are required for cell expansion.

Authors:  T A Wagner; B D Kohorn
Journal:  Plant Cell       Date:  2001-02       Impact factor: 11.277

6.  Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

Authors:  D C Boyes; A M Zayed; R Ascenzi; A J McCaskill; N E Hoffman; K R Davis; J Görlach
Journal:  Plant Cell       Date:  2001-07       Impact factor: 11.277

7.  A biochemical genomics approach for identifying genes by the activity of their products.

Authors:  M R Martzen; S M McCraith; S L Spinelli; F M Torres; S Fields; E J Grayhack; E M Phizicky
Journal:  Science       Date:  1999-11-05       Impact factor: 47.728

8.  Targeted disruption in Arabidopsis.

Authors:  S A Kempin; S J Liljegren; L M Block; S D Rounsley; M F Yanofsky; E Lam
Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

9.  Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences.

Authors:  N Pavy; S Rombauts; P Déhais; C Mathé; D V Ramana; P Leroy; P Rouzé
Journal:  Bioinformatics       Date:  1999-11       Impact factor: 6.937

Review 10.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12
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  1 in total

1.  RNAi for plant functional genomics.

Authors:  Louisa Matthew
Journal:  Comp Funct Genomics       Date:  2004
  1 in total

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