Literature DB >> 10550052

A biochemical genomics approach for identifying genes by the activity of their products.

M R Martzen1, S M McCraith, S L Spinelli, F M Torres, S Fields, E J Grayhack, E M Phizicky.   

Abstract

For the identification of yeast genes specifying biochemical activities, a genomic strategy that is rapid, sensitive, and widely applicable was developed with an array of 6144 individual yeast strains, each containing a different yeast open reading frame (ORF) fused to glutathione S-transferase (GST). For the identification of ORF-associated activities, strains were grown in defined pools, and GST-ORFs were purified. Then, pools were assayed for activities, and active pools were deconvoluted to identify the source strains. Three previously unknown ORF-associated activities were identified with this strategy: a cyclic phosphodiesterase that acts on adenosine diphosphate-ribose 1"-2" cyclic phosphate (Appr>p), an Appr-1"-p-processing activity, and a cytochrome c methyltransferase.

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Year:  1999        PMID: 10550052     DOI: 10.1126/science.286.5442.1153

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  128 in total

1.  Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1",2"-cyclic phosphate.

Authors:  F Nasr; W Filipowicz
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction.

Authors:  A Hofmann; A Zdanov; P Genschik; S Ruvinov; W Filipowicz; A Wlodawer
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

3.  Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.

Authors:  Soumya Raychaudhuri; Jeffrey T Chang; Patrick D Sutphin; Russ B Altman
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

4.  Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method).

Authors:  M He; M J Taussig
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

5.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

6.  High-density cell microarrays for parallel functional determinations.

Authors:  C Wilson Xu
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

7.  Global control of histone modification by the anaphase-promoting complex.

Authors:  Vijay Ramaswamy; Jessica S Williams; Karen M Robinson; Richelle L Sopko; Michael C Schultz
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

8.  Genome structure and thymic expression of an endogenous retrovirus in zebrafish.

Authors:  Ching-Hung Shen; Lisa A Steiner
Journal:  J Virol       Date:  2004-01       Impact factor: 5.103

Review 9.  Genomics and plant cells: application of genomics strategies to Arabidopsis cell biology.

Authors:  Michael Bevan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-06-29       Impact factor: 6.237

10.  Generation of the Brucella melitensis ORFeome version 1.1.

Authors:  Amélie Dricot; Jean-François Rual; Philippe Lamesch; Nicolas Bertin; Denis Dupuy; Tong Hao; Christophe Lambert; Régis Hallez; Jean-Marc Delroisse; Jean Vandenhaute; Ignacio Lopez-Goñi; Ignacio Moriyon; Juan M Garcia-Lobo; Félix J Sangari; Alastair P Macmillan; Sally J Cutler; Adrian M Whatmore; Stephanie Bozak; Reynaldo Sequerra; Lynn Doucette-Stamm; Marc Vidal; David E Hill; Jean-Jacques Letesson; Xavier De Bolle
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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