Literature DB >> 18629158

RNAi for plant functional genomics.

Louisa Matthew1.   

Abstract

A major challenge in the post-genome era of plant biology is to determine the functions of all the genes in the plant genome. A straightforward approach to this problem is to reduce or knock out expression of a gene with the hope of seeing a phenotype that is suggestive of its function. Insertional mutagenesis is a useful tool for this type of study, but it is limited by gene redundancy, lethal knock-outs, nontagged mutants and the inability to target the inserted element to a specific gene. RNA interference (RNAi) of plant genes, using constructs encoding self-complementary 'hairpin' RNA, largely overcomes these problems. RNAi has been used very effectively in Caenorhabditis elegans functional genomics, and resources are currently being developed for the application of RNAi to high-throughput plant functional genomics.

Entities:  

Year:  2004        PMID: 18629158      PMCID: PMC2447448          DOI: 10.1002/cfg.396

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  39 in total

1.  Function search in a large transcription factor gene family in Arabidopsis: assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes.

Authors:  R C Meissner; H Jin; E Cominelli; M Denekamp; A Fuertes; R Greco; H D Kranz; S Penfield; K Petroni; A Urzainqui; C Martin; J Paz-Ares; S Smeekens; C Tonelli; B Weisshaar; E Baumann; V Klimyuk; S Marillonnet; K Patel; E Speulman; A F Tissier; D Bouchez; J J Jones; A Pereira; E Wisman
Journal:  Plant Cell       Date:  1999-10       Impact factor: 11.277

2.  National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them.

Authors:  J Chory; J R Ecker; S Briggs; M Caboche; G M Coruzzi; D Cook; J Dangl; S Grant; M L Guerinot; S Henikoff; R Martienssen; K Okada; N V Raikhel; C R Somerville; D Weigel
Journal:  Plant Physiol       Date:  2000-06       Impact factor: 8.340

3.  Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi.

Authors:  I Maeda; Y Kohara; M Yamamoto; A Sugimoto
Journal:  Curr Biol       Date:  2001-02-06       Impact factor: 10.834

4.  DNA cloning using in vitro site-specific recombination.

Authors:  J L Hartley; G F Temple; M A Brasch
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

5.  Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

Authors:  D C Boyes; A M Zayed; R Ascenzi; A J McCaskill; N E Hoffman; K R Davis; J Görlach
Journal:  Plant Cell       Date:  2001-07       Impact factor: 11.277

6.  Total silencing by intron-spliced hairpin RNAs.

Authors:  N A Smith; S P Singh; M B Wang; P A Stoutjesdijk; A G Green; P M Waterhouse
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

7.  Functional genomic analysis of C. elegans chromosome I by systematic RNA interference.

Authors:  A G Fraser; R S Kamath; P Zipperlen; M Martinez-Campos; M Sohrmann; J Ahringer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

8.  Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III.

Authors:  P Gönczy; C Echeverri; K Oegema; A Coulson; S J Jones; R R Copley; J Duperon; J Oegema; M Brehm; E Cassin; E Hannak; M Kirkham; S Pichler; K Flohrs; A Goessen; S Leidel; A M Alleaume; C Martin; N Ozlü; P Bork; A A Hyman
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

9.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

10.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

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  13 in total

1.  Validation of molecular response of tuberization in response to elevated temperature by using a transient Virus Induced Gene Silencing (VIGS) in potato.

Authors:  Maharishi Tomar; Sundaresha S; Baljeet Singh; Vinay Bhardwaj; Salej Sood; Brajesh Singh; Neha Salaria; Kajal Thakur; Ashwani Kumar; Neha Sharma; Umesh Goutam
Journal:  Funct Integr Genomics       Date:  2021-02-21       Impact factor: 3.410

2.  Functional characterization of the powdery mildew susceptibility gene SmMLO1 in eggplant (Solanum melongena L.).

Authors:  Valentina Bracuto; Michela Appiano; Luigi Ricciardi; Deniz Göl; Richard G F Visser; Yuling Bai; Stefano Pavan
Journal:  Transgenic Res       Date:  2017-01-09       Impact factor: 2.788

3.  Functional characterization of Nicotiana benthamiana homologs of peanut water deficit-induced genes by virus-induced gene silencing.

Authors:  M Senthil-Kumar; Geetha Govind; Li Kang; Kirankumar S Mysore; M Udayakumar
Journal:  Planta       Date:  2006-08-22       Impact factor: 4.116

4.  Silencing of germacrene A synthase genes reduces guaianolide oxalate content in Cichorium intybus L.

Authors:  Milica Bogdanović; Katarina Cankar; Milan Dragićević; Harro Bouwmeester; Jules Beekwilder; Ana Simonović; Slađana Todorović
Journal:  GM Crops Food       Date:  2019-10-31       Impact factor: 3.074

5.  Production of dsRNA sequences in the host plant is not sufficient to initiate gene silencing in the colonizing oomycete pathogen Phytophthora parasitica.

Authors:  Meixiang Zhang; Qinhu Wang; Ke Xu; Yuling Meng; Junli Quan; Weixing Shan
Journal:  PLoS One       Date:  2011-11-23       Impact factor: 3.240

6.  Identification of candidate MLO powdery mildew susceptibility genes in cultivated Solanaceae and functional characterization of tobacco NtMLO1.

Authors:  Michela Appiano; Stefano Pavan; Domenico Catalano; Zheng Zheng; Valentina Bracuto; Concetta Lotti; Richard G F Visser; Luigi Ricciardi; Yuling Bai
Journal:  Transgenic Res       Date:  2015-05-07       Impact factor: 2.788

7.  Alterations in siRNA and miRNA expression profiles detected by deep sequencing of transgenic rice with siRNA-mediated viral resistance.

Authors:  Cheng Guo; Li Li; Xifeng Wang; Chun Liang
Journal:  PLoS One       Date:  2015-01-05       Impact factor: 3.240

8.  Structure, evolution and functional inference on the Mildew Locus O (MLO) gene family in three cultivated Cucurbitaceae spp.

Authors:  Paolo Iovieno; Giuseppe Andolfo; Adalgisa Schiavulli; Domenico Catalano; Luigi Ricciardi; Luigi Frusciante; Maria Raffaella Ercolano; Stefano Pavan
Journal:  BMC Genomics       Date:  2015-12-29       Impact factor: 3.969

9.  RNAi-mediated endogene silencing in strawberry fruit: detection of primary and secondary siRNAs by deep sequencing.

Authors:  Katja Härtl; Gregor Kalinowski; Thomas Hoffmann; Anja Preuss; Wilfried Schwab
Journal:  Plant Biotechnol J       Date:  2017-03-04       Impact factor: 9.803

10.  BTB-BACK Domain Protein POB1 Suppresses Immune Cell Death by Targeting Ubiquitin E3 ligase PUB17 for Degradation.

Authors:  Beatriz Orosa; Qin He; Joelle Mesmar; Eleanor M Gilroy; Hazel McLellan; Chengwei Yang; Adam Craig; Mark Bailey; Cunjin Zhang; Jonathan David Moore; Petra C Boevink; Zhendong Tian; Paul R J Birch; Ari Sadanandom
Journal:  PLoS Genet       Date:  2017-01-05       Impact factor: 5.917

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