Literature DB >> 12079388

High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded.

Ryo Kitahara1, Hiroaki Yamada, Kazuyuki Akasaka, Peter E Wright.   

Abstract

Pressure-induced reversible conformational changes of sperm whale apomyoglobin have been studied between 30 bar and 3000 bar on individual residue basis by utilizing 1H/15N hetero nuclear single-quantum coherence two-dimensional NMR spectroscopy at pH 6.0 and 35 degrees C. Apomyoglobin showed a series of pressure-dependent NMR spectra as a function of pressure, assignable to the native (N), intermediates (I), molten globule (MG) and unfolded (U) conformers. At 30 bar, the native fold (N) shows disorder only in the F helix. Between 500 bar and 1200 bar, a series of locally disordered conformers I are produced, in which local disorder occurs in the C helix, the CD loop, the G helix and part of the H helix. At 2000 bar, most cross-peaks exhibit severe line-broadening, suggesting the formation of a molten globule, but at 3000 bar all the cross-peaks reappear, showing that the molten globule turns into a well-hydrated, mobile unfolded conformation U. Since all the spectral changes were reversible with pressure, apomyoglobin is considered to exist as an equilibrium mixture of the N, I, MG and U conformers at all pressures. MG is situated at 2.4+/-(0.1) kcal/mol above N at 1 bar and the unfolding transition from the combined N-I state to MG is accompanied by a loss of partial molar volume by 75+/-(3) ml/mol. On the basis of these observations, we postulate a theorem that the partial molar volume of a protein decreases in parallel with the loss of its conformational order.

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Year:  2002        PMID: 12079388     DOI: 10.1016/S0022-2836(02)00449-7

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  19 in total

1.  Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding.

Authors:  Ryo Kitahara; Kazuyuki Akasaka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

2.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

3.  Modulation of the structural integrity of helix F in apomyoglobin by single amino acid replacements.

Authors:  Paola Picotti; Anna Marabotti; Alessandro Negro; Valeria Musi; Barbara Spolaore; Marcello Zambonin; Angelo Fontana
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

4.  The behavior of the hydrophobic effect under pressure and protein denaturation.

Authors:  J Raúl Grigera; Andres N McCarthy
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

5.  Single-molecule analysis of the rotation of F₁-ATPase under high hydrostatic pressure.

Authors:  Daichi Okuno; Masayoshi Nishiyama; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

6.  Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.

Authors:  Michael T Lerch; Joseph Horwitz; John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

7.  Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants.

Authors:  Carlos J López; Zhongyu Yang; Christian Altenbach; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

8.  Studying the unfolding kinetics of proteins under pressure using long molecular dynamic simulation runs.

Authors:  Osvaldo Chara; José Raúl Grigera; Andrés N McCarthy
Journal:  J Biol Phys       Date:  2008-07-01       Impact factor: 1.365

9.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

10.  Water-Protein Interactions Coupled with Protein Conformational Transition.

Authors:  Soichiro Kitazawa; Yu Aoshima; Takuro Wakamoto; Ryo Kitahara
Journal:  Biophys J       Date:  2018-08-08       Impact factor: 4.033

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