Literature DB >> 12073094

Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology.

Hiroaki Kitano1.   

Abstract

With the ever-increasing flow of high-throughput gene expression, protein interaction and genome sequence data, researchers gradually approach a system-level understanding of cells and even multi-cellular organisms. Systems biology is an emerging field that enables us to achieve in-depth understanding at the system level. For this, we need to establish methodologies and techniques that enable us to understand biological systems as systems, which means to understand: (1) the structure of the system, such as gene/metabolic/signal transduction networks and physical structures, (2) the dynamics of such systems, (3) methods to control systems, and (4) methods to design and modify systems to generate desired properties. However, the meaning of "system-level understanding" is still ambiguous. This paper reviews the current status of the field and outlines future research directions and issues that need to be addressed.

Mesh:

Year:  2002        PMID: 12073094     DOI: 10.1007/s00294-002-0285-z

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  28 in total

1.  Genetics, individuality, and medicine in the 21st century.

Authors:  David Valle
Journal:  Am J Hum Genet       Date:  2004-03       Impact factor: 11.025

Review 2.  High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems.

Authors:  Ji-Young Lee; Mitchell Levesque; Philip N Benfey
Journal:  Plant Physiol       Date:  2005-06       Impact factor: 8.340

Review 3.  Receptor-receptor interactions, receptor mosaics, and basic principles of molecular network organization: possible implications for drug development.

Authors:  Luigi F Agnati; Alexander O Tarakanov; Sergi Ferré; Kjell Fuxe; Diego Guidolin
Journal:  J Mol Neurosci       Date:  2005       Impact factor: 3.444

Review 4.  The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome.

Authors:  R Romero; J Espinoza; F Gotsch; J P Kusanovic; L A Friel; O Erez; S Mazaki-Tovi; N G Than; S Hassan; G Tromp
Journal:  BJOG       Date:  2006-12       Impact factor: 6.531

5.  Uncovering gene regulatory networks from time-series microarray data with variational Bayesian structural expectation maximization.

Authors:  Isabel Tienda Luna; Yufei Huang; Yufang Yin; Diego P Ruiz Padillo; M Carmen Carrion Perez
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

6.  Systemic darwinism.

Authors:  Rasmus Grønfeldt Winther
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-12       Impact factor: 11.205

7.  A first version of the Caenorhabditis elegans Promoterome.

Authors:  Denis Dupuy; Qian-Ru Li; Bart Deplancke; Mike Boxem; Tong Hao; Philippe Lamesch; Reynaldo Sequerra; Stephanie Bosak; Lynn Doucette-Stamm; Ian A Hope; David E Hill; Albertha J M Walhout; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

8.  Identifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses.

Authors:  Cheng-Wei Li; Bor-Sen Chen
Journal:  Comp Funct Genomics       Date:  2010-04-28

9.  Gene expression and regulation of higher plants under soil water stress.

Authors:  Fu-Tai Ni; Li-Ye Chu; Hong-Bo Shao; Zeng-Hui Liu
Journal:  Curr Genomics       Date:  2009-06       Impact factor: 2.236

10.  Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes.

Authors:  Adnan S Syed; Matteo D'Antonio; Francesca D Ciccarelli
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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