Literature DB >> 12072969

Density functional calculation of p K(a) values and redox potentials in the bovine Rieske iron-sulfur protein.

G Matthias Ullmann1, Louis Noodleman, David A Case.   

Abstract

The redox potential of the Rieske iron-sulfur protein depends on pH. It has been proposed that the histidines coordinating one of the irons are responsible for this pH dependence, but an experimental proof for this proposal is still lacking. In this work, we present a density functional/continuum electrostatics calculation of the p K(a) values of the histidines in the Rieske iron-sulfur center. The calculated apparent p K(a) values are 6.9 and 8.8 in the oxidized state, which are in good agreement with the corresponding experimental values of 7.5 and 9.2 and the measured pH dependence of the redox potential. Neither of these two p K(a) values can, however, be assigned to only one of the histidines. We find that both histidines titrate over a wide pH range in the oxidized state. Reduction of the iron-sulfur center shifts the p K(a) values to 11.3 and 12.8, thus above 10.0 as found experimentally. The results provide a complete picture of the coupling of proton and electron binding, showing strongly cooperative binding of protons at electrode potentials near the redox midpoint potential of the cluster. The potential biological function of the low p K(a) value of the histidines and the shift upon reduction are briefly discussed.

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Year:  2002        PMID: 12072969     DOI: 10.1007/s00775-002-0342-6

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  21 in total

1.  Structure, redox, pKa, spin. A golden tetrad for understanding metalloenzyme energetics and reaction pathways.

Authors:  Louis Noodleman; Wen-Ge Han
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

Review 2.  Metal ion oxidation state assignment based on coordinating ligand hyperfine interaction.

Authors:  Paul H Oyala; Troy A Stich; R David Britt
Journal:  Photosynth Res       Date:  2015-02-08       Impact factor: 3.573

3.  Determining Rieske cluster reduction potentials.

Authors:  Eric N Brown; Rosmarie Friemann; Andreas Karlsson; Juan V Parales; Manon M-J Couture; Lindsay D Eltis; S Ramaswamy
Journal:  J Biol Inorg Chem       Date:  2008-08-22       Impact factor: 3.358

Review 4.  Investigating the mechanisms of photosynthetic proteins using continuum electrostatics.

Authors:  G Matthias Ullmann; Edda Kloppmann; Timm Essigke; Eva-Maria Krammer; Astrid R Klingen; Torsten Becker; Elisa Bombarda
Journal:  Photosynth Res       Date:  2008-05-14       Impact factor: 3.573

5.  The iron-sulfur core in Rieske proteins is not symmetric.

Authors:  Md Ehesan Ali; Nisanth N Nair; Marius Retegan; Frank Neese; Volker Staemmler; Dominik Marx
Journal:  J Biol Inorg Chem       Date:  2014-08-24       Impact factor: 3.358

6.  Coupled transport of electrons and protons in a bacterial cytochrome c oxidase-DFT calculated properties compared to structures and spectroscopies.

Authors:  Louis Noodleman; Wen-Ge Han Du; Duncan McRee; Ying Chen; Teffanie Goh; Andreas W Götz
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

Review 7.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

8.  The protonation status of compound II in myoglobin, studied by a combination of experimental data and quantum chemical calculations: quantum refinement.

Authors:  Kristina Nilsson; Hans-Petter Hersleth; Thomas H Rod; K Kristoffer Andersson; Ulf Ryde
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

9.  Resonance Raman studies of the (His)(Cys)3 2Fe-2S cluster of MitoNEET: comparison to the (Cys)4 mutant and implications of the effects of pH on the labile metal center.

Authors:  Timothy F Tirrell; Mark L Paddock; Andrea R Conlan; Eric J Smoll; Rachel Nechushtai; Patricia A Jennings; Judy E Kim
Journal:  Biochemistry       Date:  2009-06-09       Impact factor: 3.162

10.  Binding of histidine in the (Cys)3(His)1-coordinated [2Fe-2S] cluster of human mitoNEET.

Authors:  Michelle M Dicus; Andrea Conlan; Rachel Nechushtai; Patricia A Jennings; Mark L Paddock; R David Britt; Stefan Stoll
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

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